Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19g01r
         (850 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY084181-1|AAL89919.1|  308|Drosophila melanogaster RE54230p pro...    31   2.0  
AE013599-900|AAM71078.1|  308|Drosophila melanogaster CG30339-PA...    31   2.0  

>AY084181-1|AAL89919.1|  308|Drosophila melanogaster RE54230p
           protein.
          Length = 308

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 16/51 (31%), Positives = 31/51 (60%)
 Frame = +1

Query: 580 LSSFNTGDIK*FHILTQFRIFLEIVQLLMRKDEVSNISRYIDSLNNSRVVL 732
           L+++   D K F +L  FR    I +  +R+D+ SNIS Y++ ++ +++ L
Sbjct: 118 LTNYEKFDPKEFKLLDLFRYQTMITEQSIREDDHSNISGYVEIVDMAKMSL 168


>AE013599-900|AAM71078.1|  308|Drosophila melanogaster CG30339-PA
           protein.
          Length = 308

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 16/51 (31%), Positives = 31/51 (60%)
 Frame = +1

Query: 580 LSSFNTGDIK*FHILTQFRIFLEIVQLLMRKDEVSNISRYIDSLNNSRVVL 732
           L+++   D K F +L  FR    I +  +R+D+ SNIS Y++ ++ +++ L
Sbjct: 118 LTNYEKFDPKEFKLLDLFRYQTMITEQSIREDDHSNISGYVEIVDMAKMSL 168


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,878,734
Number of Sequences: 53049
Number of extensions: 491591
Number of successful extensions: 841
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4065385896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)