Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19f23f
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    24   0.96 
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    24   0.96 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   1.7  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   9.0  

>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 652 QIFINRN*SLRINV*RIFMNCFVLI 578
           +I  N N SL IN   IF+ CFV++
Sbjct: 75  RIATNENNSLVINKRLIFIECFVMM 99


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 652 QIFINRN*SLRINV*RIFMNCFVLI 578
           +I  N N SL IN   IF+ CFV++
Sbjct: 75  RIATNENNSLVINKRLIFIECFVMM 99


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 11  VWKSNREAKMKFLITVATIVAMASAVP 91
           VW SNR A+++  IT A    + S  P
Sbjct: 266 VWFSNRRARLRKQITSAATPLVRSYAP 292


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +2

Query: 353 VDEESEIKPDPVIVVDGPEVTPVIIADPAIV 445
           +D+ES+I   P + + GP     +  D  ++
Sbjct: 306 MDDESDINGTPPLHISGPAEAGPLTKDAGLL 336


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,598
Number of Sequences: 336
Number of extensions: 2653
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)