Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19f21r
(827 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0145 + 14082864-14082946,14083060-14083267,14083383-140835... 48 1e-05
11_06_0591 - 25300751-25300918,25301325-25301874,25301954-25302042 38 0.007
09_04_0404 + 17322664-17322718,17323676-17323849,17324695-173248... 38 0.007
11_06_0581 - 25189303-25189470,25190178-25190715,25190789-25190877 36 0.030
01_07_0064 + 40834649-40834786,40834934-40834997,40835333-408353... 36 0.052
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850... 33 0.28
06_02_0059 - 11022306-11022578,11022812-11022881,11022966-110232... 32 0.64
03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178 31 1.1
01_01_0622 + 4649195-4649713,4650222-4650400,4650500-4650800 31 1.5
01_01_0962 + 7570490-7570796,7571984-7572540,7572702-7572749,757... 30 2.6
11_03_0028 - 9080650-9080667,9080701-9080794,9082099-9082185,908... 29 4.5
08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426 29 4.5
03_02_0211 - 6436275-6436361,6436969-6437235,6438475-6438543,643... 29 6.0
11_01_0561 - 4418452-4418658,4420168-4420509 28 7.9
11_01_0556 + 4390000-4390431 28 7.9
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 28 7.9
>11_04_0145 +
14082864-14082946,14083060-14083267,14083383-14083599,
14084170-14084276,14085521-14085674,14086848-14087029
Length = 316
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/68 (38%), Positives = 38/68 (55%)
Frame = -1
Query: 791 GTVLNISSVAALCQSHLFPIYFGTKSAVLQFSNCIGLEEHYAKSGVRVLSICFGATDTPL 612
G+++NISSVA++ H PIY K A+ Q + + E +A G+RV S+ G TPL
Sbjct: 145 GSIVNISSVASVLAFHSLPIYSAAKGAMNQVTRNLACE--WASDGIRVNSVAPGYIQTPL 202
Query: 611 LNGTKLGS 588
L G+
Sbjct: 203 LTAFVAGN 210
>11_06_0591 - 25300751-25300918,25301325-25301874,25301954-25302042
Length = 268
Score = 38.3 bits (85), Expect = 0.007
Identities = 28/98 (28%), Positives = 44/98 (44%)
Frame = -1
Query: 815 GKAECGKGGTVLNISSVAALCQSHLFPIYFGTKSAVLQFSNCIGLEEHYAKSGVRVLSIC 636
G A G GG V+NISSVA +Y TK + Q + + E +A G+RV +
Sbjct: 145 GGARGGGGGCVVNISSVAGSVGMPALAVYSMTKGGMNQLTRSLAAE--WAGDGIRVNCVA 202
Query: 635 FGATDTPLLNGTKLGSFDEEIDGTCVEAIQKNYPIQKM 522
G T + DE ID +++ P++++
Sbjct: 203 PGGVKTDICQ-------DETIDPELIKSEMDRLPMRRL 233
>09_04_0404 +
17322664-17322718,17323676-17323849,17324695-17324876,
17325312-17325417,17325708-17325784,17326485-17326572,
17327320-17327509,17328353-17328479,17328584-17328664,
17328815-17328916,17329042-17329137,17329279-17329353,
17329746-17329865,17330319-17330447,17330762-17330839,
17331330-17331416,17333538-17333651,17334294-17334362,
17334741-17334785
Length = 664
Score = 38.3 bits (85), Expect = 0.007
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = -1
Query: 797 KGGTVLNISSVAALCQSHLFPIYFGTKSAVLQFSNCIG-LEEHYAKSGVRVLSIC 636
K G ++NI S A L + PIY GTK+ V+ F+ + L+ H G+RV +C
Sbjct: 146 KPGVIINIGSAAGLYPMNFDPIYSGTKAGVVMFTRSLAPLKRH----GIRVNVLC 196
>11_06_0581 - 25189303-25189470,25190178-25190715,25190789-25190877
Length = 264
Score = 36.3 bits (80), Expect = 0.030
Identities = 26/93 (27%), Positives = 42/93 (45%)
Frame = -1
Query: 800 GKGGTVLNISSVAALCQSHLFPIYFGTKSAVLQFSNCIGLEEHYAKSGVRVLSICFGATD 621
G GG V+NISSVA +Y TK + Q + + E +A G+RV + G
Sbjct: 146 GGGGCVVNISSVAGTVGIPALAVYSMTKGGMNQLTRSLAAE--WAGDGIRVNCVAPGGVK 203
Query: 620 TPLLNGTKLGSFDEEIDGTCVEAIQKNYPIQKM 522
T + DE ID +++ P++++
Sbjct: 204 TDICQ-------DETIDPELIKSEMDRLPMRRL 229
>01_07_0064 +
40834649-40834786,40834934-40834997,40835333-40835391,
40835602-40835677,40835775-40835846,40837641-40837728,
40838239-40838497,40838766-40839000,40839447-40839470,
40839910-40839997,40840110-40840300,40841082-40841322,
40841803-40842556
Length = 762
Score = 35.5 bits (78), Expect = 0.052
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -1
Query: 800 GKGGTVLNISSVAALCQSHLFPIYFGTKSAVLQFSNCIGLEEHYAKSGVRVLSICFGATD 621
G +V+NISSVA +Y TK A+ Q + + E +A+ G+RV + G
Sbjct: 637 GAAASVVNISSVAGFIAYPALSVYSATKGAMNQLTRSLAAE--WARDGIRVNCVAPGGVR 694
Query: 620 TPL 612
T +
Sbjct: 695 TDI 697
>07_03_1591 +
27967065-27967090,27967236-27968054,27984940-27985022,
27985590-27985744,27985956-27986461,27986551-27986703,
27987146-27987485,27987558-27987822,27987897-27988634,
27989734-27989779,27989849-27990223,27991511-27991567,
27991640-27992438
Length = 1453
Score = 33.1 bits (72), Expect = 0.28
Identities = 23/61 (37%), Positives = 31/61 (50%)
Frame = -1
Query: 791 GTVLNISSVAALCQSHLFPIYFGTKSAVLQFSNCIGLEEHYAKSGVRVLSICFGATDTPL 612
G VL SS A + P+Y +K+ V+ E A+ G+RV +I GAT TPL
Sbjct: 171 GCVLCTSSGAGVIPVPAVPVYSVSKATVIAIVRAAA--EPMARHGLRVNAISPGATRTPL 228
Query: 611 L 609
L
Sbjct: 229 L 229
>06_02_0059 -
11022306-11022578,11022812-11022881,11022966-11023254,
11023770-11024109
Length = 323
Score = 31.9 bits (69), Expect = 0.64
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -1
Query: 791 GTVLNISSVAA--LCQSHLFPIYFGTKSAVLQFSNCIGLEEHYAKSGVRV 648
G V+NI S +A L L+ +Y GTK+ V +FS GL Y + G+ V
Sbjct: 183 GAVVNIGSASAEALPSFPLYSVYAGTKAYVGEFSR--GLSVEYKRKGIDV 230
>03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178
Length = 1122
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -2
Query: 541 IILFKRWNLQPKVWSRPMSMLKVATLGSSQQTNRQRTSLIQLKSLMNFYRITF 383
++L WN+Q ++W +S+L A LG T R T + ++ M Y ++F
Sbjct: 292 LVLDNVWNVQKEIWDALLSLLVGAQLGMILLTTRDET-ISKMIGTMPSYDLSF 343
>01_01_0622 + 4649195-4649713,4650222-4650400,4650500-4650800
Length = 332
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 450 CCDDPSVATFSMLIGLDQTFGCRFHLLNR-IILLDGL 557
C DDP + T M + DQ GC+ L++ +I+LDG+
Sbjct: 163 CRDDPQLITSEMKVKGDQQQGCKDKRLSKGLIVLDGV 199
>01_01_0962 +
7570490-7570796,7571984-7572540,7572702-7572749,
7572841-7573789,7574573-7575528
Length = 938
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = -1
Query: 590 SFDEEIDGTCV--EAIQKNYPIQKMESAAKGLVEAYEHAKSGDTWIITTNKPAKNITDTV 417
S D+ D +C+ E + + K + LV+ + KSGD +++TT+ + D
Sbjct: 124 SIDDNTDSSCLFKERLTQALRYFKESTDQHLLVQVWAPVKSGDRYVLTTS-GQPFVLD-- 180
Query: 416 KKSYELLSYHVFN*MFFFS 360
++S LL Y + M+ FS
Sbjct: 181 QQSIGLLQYRAVSMMYMFS 199
>11_03_0028 -
9080650-9080667,9080701-9080794,9082099-9082185,
9082276-9082333,9083535-9083598,9083837-9083898,
9083976-9084027,9084410-9084530,9085369-9085463
Length = 216
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +1
Query: 58 FFLLPGRKFDIVKNL---APVEYRAGVQGRCPVGGQGGRAFCLFHF 186
F LPG I K++ AP+ R+ VQGR + GR C HF
Sbjct: 21 FACLPGLVAGIRKDIGLAAPIMCRSTVQGRHLISDDNGRTPCPSHF 66
>08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426
Length = 284
Score = 29.1 bits (62), Expect = 4.5
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -1
Query: 791 GTVLNISSVAALCQSHL--FPIYFGTKSAVLQFSNCIGLEEHYAKSGVRVLSICFG 630
G+V+NISSV+ L + HL Y +KSA+ + + LE G+RV SI G
Sbjct: 158 GSVINISSVSGLNRGHLPGSTGYAASKSAMHYATKLMALE--LGAYGIRVNSIAPG 211
>03_02_0211 -
6436275-6436361,6436969-6437235,6438475-6438543,
6439108-6439236,6439319-6439480,6439558-6439678,
6439813-6439928,6440697-6440762,6441010-6441091,
6441236-6441327,6441430-6441537,6441919-6442013,
6442092-6442234,6442336-6442364,6442452-6442571,
6442645-6442734,6443116-6443181,6443267-6443380,
6443482-6443574
Length = 682
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 363 EKKHSIENVIR*KFIRLFNCISDVLCRFVCCDDPSVATFSMLI 491
E ++I V+R FI FN I D LC+ D +V + + L+
Sbjct: 114 EALYNIAKVVRGDFIIYFNKIFDALCKLSADSDANVQSAAHLL 156
>11_01_0561 - 4418452-4418658,4420168-4420509
Length = 182
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -3
Query: 168 GTPPLPPDRASPLDPGSVLHGC*VFYNVEL 79
G PP+PP A PL P L G F +VEL
Sbjct: 7 GPPPVPPPTAPPLPPERQLSG--EFVDVEL 34
>11_01_0556 + 4390000-4390431
Length = 143
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -3
Query: 168 GTPPLPPDRASPLDPGSVLHGC*VFYNVEL 79
G PP+PP A PL P L G F +VEL
Sbjct: 7 GPPPVPPPSAPPLPPERQLSG--EFVDVEL 34
>05_03_0031 -
7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -1
Query: 605 GTKLGSFDEEIDGTCVE--AIQKNYPIQKMESAAKGL 501
GT + + D E+D TC A++++ I K++SAA +
Sbjct: 316 GTTMDAKDPEVDATCANGTALRRSRRIMKIKSAASSM 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,977,080
Number of Sequences: 37544
Number of extensions: 552462
Number of successful extensions: 1683
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1677
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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