Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19f21r
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    27   0.28 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   1.1  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    24   2.0  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    24   2.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.0  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -1

Query: 791 GTVLNISSVAALC---QSHLFPIYFGTKSAVLQFSNCIGLEEHYAKSGVRVLSICFGATD 621
           G ++NI+  + L     +   P Y  +K A+   ++C+  E    +S ++V+SI     +
Sbjct: 138 GIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSELAQCESNIKVISISPDLVE 197

Query: 620 TPL 612
           T +
Sbjct: 198 TDM 200


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 417 NCISDVLCRFVCCDDPSVATFSMLIGL 497
           +CI ++L       DPS A FS  IGL
Sbjct: 335 DCIHELLGHMPLLADPSFAQFSQEIGL 361


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 494 AYEHAKSGDTWIITTNKPAKNITDTVK 414
           ++E +K+GD W  T++      T T K
Sbjct: 36  SFELSKNGDEWTFTSSSGDNTYTKTFK 62


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 494 AYEHAKSGDTWIITTNKPAKNITDTVK 414
           ++E +K+GD W  T++      T T K
Sbjct: 38  SFELSKNGDEWTFTSSSGDNTYTKTFK 64


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/37 (29%), Positives = 13/37 (35%)
 Frame = -1

Query: 176 KQKARPPCPPTGHRPWTPARYSTGAKFFTMSNFRPGR 66
           K K  P    +G   W       GAK      F PG+
Sbjct: 139 KHKVNPLLMQSGMGSWEVYTKGIGAKLLLQMGFEPGK 175


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 163 APLAPRQGIAPGPRLGTP 110
           +P AP++G  P P  G P
Sbjct: 30  SPQAPQRGSPPNPSQGPP 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,623
Number of Sequences: 438
Number of extensions: 5499
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)