Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19f21f
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    66   4e-13
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.2  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   3.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.0  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   9.0  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   9.0  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 65.7 bits (153), Expect = 4e-13
 Identities = 39/134 (29%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
 Frame = +1

Query: 31  ESWKGKIVLITGAASGIGEGVVRLILERGVKHVAILDVAEDSGRALENELNTKYGPNCVK 210
           ++W  ++ L+TGA SGIG+ ++  ++ +G+K + I     D  + L  EL +K  P  + 
Sbjct: 3   QNWIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQV-DKMKTLVEELKSK--PGKLV 59

Query: 211 FYKCDVTVEELFLELFDTVKNEQGYLDVVINNAAI------MNDSYKSYKKQIDINVTAL 372
             +CD++ +   L++ + V+   G +D++INNA I       ND    +KK  DIN+  L
Sbjct: 60  PLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGL 119

Query: 373 VTGTLKAIEIMGKQ 414
                + +++M K+
Sbjct: 120 TCMIQEVLKLMKKK 133



 Score = 26.6 bits (56), Expect = 0.24
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +3

Query: 429 GTVLNISSVAALC---QSHLFPIYFGTKSAVLQFSNCIGLEEHYAKSGVRVLSICFGATD 599
           G ++NI+  + L     +   P Y  +K A+   ++C+  E    +S ++V+SI     +
Sbjct: 138 GIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSELAQCESNIKVISISPDLVE 197

Query: 600 TPL 608
           T +
Sbjct: 198 TDM 200


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 172 NELNTKYGPNCVKFYKCDVTVEEL 243
           N  N  Y  NC K Y   + +E++
Sbjct: 341 NNYNNNYNNNCKKLYYNIINIEQI 364


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 208 KFYKCDVTVEELFLELFDTVKNEQGYLDVVINNAAIMNDS-YKSYKKQIDINV 363
           ++ K   T +E F +  +  ++++  +   ++N  I N++ YK+Y K++  N+
Sbjct: 288 EYRKYRETSKERFRDRRERERSKESKIISSLSNKTIHNNNNYKNYNKKLYYNI 340


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 378 WYTESYRDYGKAECGKG 428
           W T+SY+  G+   G+G
Sbjct: 128 WETDSYKLIGRIAAGEG 144


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 105 YKPDHSFADTACGTSDKH 52
           YK  HS ++   GTS+K+
Sbjct: 443 YKGAHSISEIMSGTSNKY 460


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 105 YKPDHSFADTACGTSDKH 52
           YK  HS ++   GTS+K+
Sbjct: 443 YKGAHSISEIMSGTSNKY 460


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,632
Number of Sequences: 438
Number of extensions: 4480
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)