Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19f18r
(828 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 93 6e-20
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 29 0.61
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 28 1.9
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 27 3.2
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 26 5.7
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 26 7.5
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 9.9
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 9.9
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 9.9
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 9.9
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 9.9
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 9.9
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 9.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.9
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 9.9
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 9.9
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 9.9
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 9.9
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 25 9.9
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 9.9
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 92.7 bits (220), Expect = 6e-20
Identities = 48/151 (31%), Positives = 87/151 (57%), Gaps = 7/151 (4%)
Frame = -1
Query: 798 MDGMMHAREWVTTPVTMYSIFRLVENLRDNE--RDLLEDIDWIILPIVNPDGYEFSHTDD 625
+ G HAREW+ P Y+ ++L+ + R LL+ +WI +P++N DGYE++ ++D
Sbjct: 243 IQGGSHAREWIGIPSVCYAAWQLLAKYDSDGHVRKLLDKFEWIFIPVLNVDGYEYTWSND 302
Query: 624 RLWRRTRS-VNLEVSTTCFGVDANRNFDVDFNTLGVSSDPCSQTYPGVAPFSEPET---- 460
RLW + R +N ++ CFG++ + N+ FN + DPCS Y G++PF ET
Sbjct: 303 RLWSKNRQPLN---NSECFGINLDANWAFGFNG---NIDPCSNEYGGLSPFQANETMALF 356
Query: 459 RIVRDILSKYLPRIQLYNNIHSHGNYVLFGF 367
++ + LS+ ++ + ++HS+ VL+ +
Sbjct: 357 NLITESLSQEQKKVVGFLDVHSYSQSVLWPY 387
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 29.5 bits (63), Expect = 0.61
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 348 VSKCCFQNRTKHSFHGYECYCKAVYVASTSRG 443
V +C +N H+F G C C VY T G
Sbjct: 105 VDECGSENDYNHNFEGRFCICDTVYNPETEEG 136
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 194 VSPSRTRWSCLDTATTSGYRLLSSITSTRRP 102
+ PSR+ ++ DT + + LLSS+T+ + P
Sbjct: 497 IEPSRSSFATNDTGSYNNLELLSSVTNLKSP 527
>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = -1
Query: 480 PFSEPETRIVRDILSKYLPR--IQLYNNIHSHGNYVLFGFGN-NTLTPNVAQLH 328
P S + V+D+ + P N +HSHG L GF N +TL P+ + H
Sbjct: 54 PGSNMQISFVKDLATPRDPTSYFTFLNYLHSHGQERLSGFLNMSTLEPSRYEYH 107
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/46 (21%), Positives = 20/46 (43%)
Frame = +2
Query: 656 GLTIGKMIQXXXXXXXXXXXXXXXXXXKIEYIVTGVVTHSRACIMP 793
GLT+G+ + IEY+ + +V H++ ++P
Sbjct: 357 GLTVGRQVSKKYPEYLWKPQVLSLALHSIEYLASAIVNHNQNTLLP 402
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 510 PCSQTYPGVAPFSEPETRIVRDILSKYLPRIQL 412
P +QT PG+ P + V+ +LS+Y+ R +L
Sbjct: 268 PNTQT-PGLRPMELKDVPAVQSLLSQYMERFEL 299
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 6/24 (25%), Positives = 17/24 (70%)
Frame = +1
Query: 385 VSMAMNVIVKLYTWQVLREDVPDY 456
+ + N+I++ +TW+ +R+ + +Y
Sbjct: 930 IELLTNIILRRFTWKGIRKQIQEY 953
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 6/24 (25%), Positives = 17/24 (70%)
Frame = +1
Query: 385 VSMAMNVIVKLYTWQVLREDVPDY 456
+ + N+I++ +TW+ +R+ + +Y
Sbjct: 930 IELLTNIILRRFTWKGIRKQIQEY 953
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 6/24 (25%), Positives = 17/24 (70%)
Frame = +1
Query: 385 VSMAMNVIVKLYTWQVLREDVPDY 456
+ + N+I++ +TW+ +R+ + +Y
Sbjct: 930 IELLTNIILRRFTWKGIRKQIQEY 953
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 6/24 (25%), Positives = 17/24 (70%)
Frame = +1
Query: 385 VSMAMNVIVKLYTWQVLREDVPDY 456
+ + N+I++ +TW+ +R+ + +Y
Sbjct: 930 IELLTNIILRRFTWKGIRKQIQEY 953
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 6/24 (25%), Positives = 17/24 (70%)
Frame = +1
Query: 385 VSMAMNVIVKLYTWQVLREDVPDY 456
+ + N+I++ +TW+ +R+ + +Y
Sbjct: 930 IELLTNIILRRFTWKGIRKQIQEY 953
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 6/24 (25%), Positives = 17/24 (70%)
Frame = +1
Query: 385 VSMAMNVIVKLYTWQVLREDVPDY 456
+ + N+I++ +TW+ +R+ + +Y
Sbjct: 930 IELLTNIILRRFTWKGIRKQIQEY 953
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 52 AAVVNL*KASSDGDSLPGLLVDVIDERRR 138
A V+N+ K S GD + ++DV E+RR
Sbjct: 1273 AVVLNISKLYSSGDKVRAHVLDVDSEKRR 1301
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 9.9
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -2
Query: 209 TVSMLVSPSRTRWSCLDTATTSGYRLLSSITSTRRPGRESPSLLAFQRFTTAAELVDN 36
T S L S S T S ++TTS SSITS+ S TT++ L +
Sbjct: 105 TSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASS 162
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 6/24 (25%), Positives = 17/24 (70%)
Frame = +1
Query: 385 VSMAMNVIVKLYTWQVLREDVPDY 456
+ + N+I++ +TW+ +R+ + +Y
Sbjct: 930 IELLTNIILRRFTWKGIRKQIQEY 953
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 6/24 (25%), Positives = 17/24 (70%)
Frame = +1
Query: 385 VSMAMNVIVKLYTWQVLREDVPDY 456
+ + N+I++ +TW+ +R+ + +Y
Sbjct: 930 IELLTNIILRRFTWKGIRKQIQEY 953
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 6/24 (25%), Positives = 17/24 (70%)
Frame = +1
Query: 385 VSMAMNVIVKLYTWQVLREDVPDY 456
+ + N+I++ +TW+ +R+ + +Y
Sbjct: 930 IELLTNIILRRFTWKGIRKQIQEY 953
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 6/24 (25%), Positives = 17/24 (70%)
Frame = +1
Query: 385 VSMAMNVIVKLYTWQVLREDVPDY 456
+ + N+I++ +TW+ +R+ + +Y
Sbjct: 930 IELLTNIILRRFTWKGIRKQIQEY 953
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 558 NRNFDVDFNTLGVSSDP-CSQTYPGVAPFSEPETRIVRDILSK 433
N +FD DFN + + DP +Q FS+P T+ +R L +
Sbjct: 391 NDHFDADFNFIQIDHDPITNQETRKPVKFSKP-TKDIRSRLKE 432
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 6/24 (25%), Positives = 17/24 (70%)
Frame = +1
Query: 385 VSMAMNVIVKLYTWQVLREDVPDY 456
+ + N+I++ +TW+ +R+ + +Y
Sbjct: 930 IELLTNIILRRFTWKGIRKQIQEY 953
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,453,590
Number of Sequences: 5004
Number of extensions: 74590
Number of successful extensions: 214
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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