Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19f18r
(828 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0141 + 1017654-1017745,1018332-1018389,1018485-1018595,101... 65 7e-11
08_02_1156 - 24760332-24761530,24762757-24763648 32 0.48
06_03_1406 - 29949367-29949556,29949753-29949837,29950625-299507... 32 0.48
02_02_0378 + 9561775-9562947 29 3.4
10_08_0444 + 17971724-17971797,17972119-17972176,17972613-179727... 29 6.0
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 29 6.0
09_03_0166 + 12956794-12956832,12956936-12956977,12957084-129571... 28 7.9
>02_01_0141 +
1017654-1017745,1018332-1018389,1018485-1018595,
1018853-1018990,1019559-1019628,1019711-1019766,
1020203-1020328,1020648-1020787,1020932-1021004,
1021095-1021169,1021277-1021591
Length = 417
Score = 64.9 bits (151), Expect = 7e-11
Identities = 60/216 (27%), Positives = 94/216 (43%), Gaps = 8/216 (3%)
Frame = -1
Query: 783 HAREWVTTPVTMYSIFRLVENLRDNERDL------LEDIDWIILPIVNPDGYEFSHTDDR 622
H RE +T+ V + ++ L E + DL LE++ ++P+ N +G + +
Sbjct: 92 HGRELITSEVALNLLYILTEKRKIAGVDLSSFEKILENLVIKVVPMENLNGRKRVEEGEL 151
Query: 621 LWRRTRSVNLEVSTTCFGVDANRNFDVDFNTLGVSSDPCSQTYPGVAPFSEPETRIVRDI 442
RR GVD NRN+ VD+ DP + PG APFSEPE +I+R++
Sbjct: 152 CDRRNGR----------GVDLNRNWSVDWGKKEKDYDPYEEN-PGTAPFSEPEAQIMREL 200
Query: 441 LSKYLPRIQLYNNIHSHGNYVLFGFGNNTLTPNVAQLHHVXXXXXXXXXAVKLPEAGYYL 262
+ P ++ N+HS + + + TPN A H + L
Sbjct: 201 SKSFKP--HMWVNVHSGMEALFMPYDHKNTTPNGASAHLMRTVLENLNHRHFQDSC---L 255
Query: 261 IGN-SGLVLYRTSGSAQDYGQH-VGVPFSYTLELPG 160
+G+ G V Y G+ DY V VP +T E+ G
Sbjct: 256 VGSGGGAVGYLAHGTTTDYMYDIVKVPMPFTFEIYG 291
>08_02_1156 - 24760332-24761530,24762757-24763648
Length = 696
Score = 32.3 bits (70), Expect = 0.48
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 366 QNRTKHSFHGYECYCKAVYVAS--TSRGCPGLFLFLV 470
QN T + ++GY+C C A Y + GC GL + LV
Sbjct: 268 QNYTSYVYNGYQCRCNAGYQGNPYIPNGCQGLSIGLV 304
>06_03_1406 -
29949367-29949556,29949753-29949837,29950625-29950791,
29951232-29952049
Length = 419
Score = 32.3 bits (70), Expect = 0.48
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 97 LPGLLVDVIDERRRYPEVVAVSRQLQRVREGDTNMLTVIL 216
+PG + +ID R YP + A L R+R GDT++ + L
Sbjct: 77 IPGAQLHLIDRHRSYP-LAAGDLSLLRIRSGDTSLAAIAL 115
>02_02_0378 + 9561775-9562947
Length = 390
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -2
Query: 341 WRSCIMWLPRWA--LPWTLSNYPKPD 270
WR + +LPR LPW L+ +P PD
Sbjct: 35 WRDALRYLPRRPSFLPWLLAPWPTPD 60
>10_08_0444 +
17971724-17971797,17972119-17972176,17972613-17972708,
17972974-17973000,17973019-17973075,17973604-17973687,
17974304-17974384,17974928-17975071,17975218-17975309,
17975998-17976079,17976818-17977000,17977360-17977438,
17977555-17977613,17978162-17978290,17979188-17979367,
17980312-17980446,17980528-17980602,17980890-17980947,
17981035-17981282,17981594-17981733,17981961-17982132,
17982797-17982887,17983099-17983221,17984951-17985032,
17985715-17985835,17985886-17985915,17986427-17986549
Length = 940
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = -3
Query: 541 RLQYPRGIQRPVLPDVPRGRAVLRTRNKNSPGHPLEVLATYTALQ*HS*PWKLCFVRFWK 362
R + G + +L ++ R V N +P EV+ L HS CF+RF+K
Sbjct: 313 RFMFSLGERASILKEIDRPGLVPHISEVNPVKYPYEVIFRSIFLSRHSLVKNHCFIRFFK 372
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 238 IQNFWKRPGLRSACWCPLLVHA 173
++ FW LR CWCP+LV A
Sbjct: 1065 LEKFWS--DLRMICWCPVLVTA 1084
>09_03_0166 +
12956794-12956832,12956936-12956977,12957084-12957149,
12957237-12957350,12957435-12957515,12957613-12957690,
12958702-12958784,12959645-12959726,12959801-12959901,
12960016-12960055,12960162-12960221,12960302-12960348,
12960437-12960575,12960716-12960931,12961010-12961344,
12961525-12961596,12962449-12962589,12962680-12962716,
12962837-12963256
Length = 730
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 366 QNRTKHSFHGYECYCKAVYVASTSRGCPGLFLFLVRRTARPLG 494
+ +T H HG+ K+ V S+SR PGL +V R ++ +G
Sbjct: 530 RGKTGH-VHGHHGVTKSSGVTSSSRSGPGLHTVIVPRVSQTVG 571
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,160,875
Number of Sequences: 37544
Number of extensions: 510142
Number of successful extensions: 1426
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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