Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19f18f
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 89 9e-19
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce... 30 0.42
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 29 0.74
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 27 2.3
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 27 3.0
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 26 5.2
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 26 6.9
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.1
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 25 9.1
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 88.6 bits (210), Expect = 9e-19
Identities = 66/245 (26%), Positives = 116/245 (47%), Gaps = 19/245 (7%)
Frame = +3
Query: 84 VFAGKHDIYSRHAVYGVELRDQDDVATLFNLQQKLNVDIWEHGMARV--RDAEVMVSPEQ 257
++A K Y+ V + L ++++++ + Q N+DIW++ V R E +
Sbjct: 65 IWAEKIPDYNEEIVVRLHLEEENNLSDILQKAQSQNLDIWDYNFDHVDLRLKEENFDFWK 124
Query: 258 SKEFFETLDNNGLKYYLK--IEDVSKVLKEHEEDLAKWRRNRNNR--------MIFQDYP 407
S+ + L NN + + + D + E L N + F+ Y
Sbjct: 125 SQYRSDILINNLTETLFESIVPDTTNSPFSTEAFLQAVENGHLNHEMFTSFTDIFFKSYQ 184
Query: 408 RYAEVNQYMEEIAARYPNLVTLVNAGKSFEGRDIKYLKIS----TTNFEDPR-KPVYFMD 572
+N ++ +A+ Y +L LV G + EGR I LK++ + N E R K V +
Sbjct: 185 NLESINSWLRLMASLYKDLSELVPVGITAEGRTILGLKLNGRHPSDNGEKIRNKKVIIIQ 244
Query: 573 GMMHAREWVTTPVTMYSIFRLVENLRDNE--RDLLEDIDWIILPIVNPDGYEFSHTDDRL 746
G HAREW+ P Y+ ++L+ + R LL+ +WI +P++N DGYE++ ++DRL
Sbjct: 245 GGSHAREWIGIPSVCYAAWQLLAKYDSDGHVRKLLDKFEWIFIPVLNVDGYEYTWSNDRL 304
Query: 747 WRRTR 761
W + R
Sbjct: 305 WSKNR 309
>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 170
Score = 29.9 bits (64), Expect = 0.42
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Frame = +3
Query: 519 KISTTNFEDPRKPVYFMDGMMHAREWVTTPVTMYSIFRLVENLRDNERDLLEDIDWII-L 695
++S+ + VYF M + WV +YS F NL D + + I+ +
Sbjct: 12 RLSSLHVSSRSLGVYFAGIMFASAVWVFVDAALYSAFDYARNLHITFIDWIPFLCSILGI 71
Query: 696 PIVNP------DGYEFSHTDDRLWRRTRSV 767
IVN G F++TD+ L R+ R +
Sbjct: 72 VIVNSIDKSRLSGDSFAYTDESLARKARFI 101
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 29.1 bits (62), Expect = 0.74
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = -2
Query: 298 FKPLLSKVSKNSLDCSGETMTSASLTLAIPCSQISTFSFCWRLKRVA 158
F+PL+ K + + + C + S SLT + CS+++TF +LK VA
Sbjct: 967 FEPLIFKCTASRI-CKVREIASLSLTCLLDCSKMTTF-IVSQLKGVA 1011
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 228 DAEVMVSPEQSKEFFETLDNNGLKYYLKIEDVSKVLKEHEEDLAK 362
D +S + + F N YLK ED+S +LK+ +E L K
Sbjct: 230 DPNQTISNKSASSAFSLFSNLIGGKYLKEEDLSPILKQMQEHLTK 274
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 261 KEFFETLDNNGLKYYLKIEDVSKVLKE 341
KEF ET +NG+K ++I + +K+ KE
Sbjct: 63 KEFKETTKSNGVKPEVEITESTKIQKE 89
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/46 (21%), Positives = 20/46 (43%)
Frame = -2
Query: 709 GLTIGKMIQXXXXXXXXXXXXXXXXXLKIEYIVTGVVTHSRACIMP 572
GLT+G+ + IEY+ + +V H++ ++P
Sbjct: 357 GLTVGRQVSKKYPEYLWKPQVLSLALHSIEYLASAIVNHNQNTLLP 402
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.8 bits (54), Expect = 6.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 363 WRRNRNNRMIFQDYP 407
WRRNRN ++I++ P
Sbjct: 956 WRRNRNEKLIYRTRP 970
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 665 IPLIISQVLYEPED*VHRDWSRDPFTSVHHAIHEVN 558
+PL + ++ P V + W R P T V +AI VN
Sbjct: 59 LPLNLCDYIFFPIVPVLKSWYRVPSTGVEYAIQCVN 94
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -1
Query: 422 YLSVTRIILKDHSVISVSPPF---RQILFVLLQNFRNIFYFQII 300
Y+S +R++ DH ++ + Q + V LQ N + FQ +
Sbjct: 531 YISSSRLVHVDHQILQDRSKYWKINQAMLVTLQRLYNFYRFQYL 574
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,080
Number of Sequences: 5004
Number of extensions: 64925
Number of successful extensions: 214
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -