Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19f18f
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0082 - 10467972-10468486,10468530-10468670,10469211-10469538 30 2.3
08_02_1386 + 26646156-26646407,26646506-26646612,26646921-266470... 29 3.1
02_02_0593 + 11964580-11964831,11964930-11965036,11965345-119654... 29 3.1
11_03_0032 - 9105130-9105286,9105321-9105384,9106355-9106487 29 4.1
08_01_0064 + 444888-444959,445073-445277,445736-445901,446029-44... 28 7.2
04_04_1679 + 35316170-35316628,35317064-35317219 28 7.2
04_04_1634 + 34937087-34937198,34937652-34937790,34938263-349383... 28 9.5
01_07_0307 + 42647006-42647202,42647287-42647866 28 9.5
>10_06_0082 - 10467972-10468486,10468530-10468670,10469211-10469538
Length = 327
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/143 (16%), Positives = 57/143 (39%), Gaps = 3/143 (2%)
Frame = +3
Query: 258 SKEFFETLDNNGLKYYLKIEDVSKVLKEHEEDLAKWRRNRNNRMIFQDYP-RYAEV-NQY 431
+KEF +L +G KY + ++ +++ ++ + Y + ++ ++Y
Sbjct: 92 AKEFENSLKYSGYKYIHQESSDRDIIDNRRHSISELMEKLDHESEIKYYEDKLRDIADEY 151
Query: 432 MEEIAARYPNLVTLVNAGKSFEGRDIKYLKISTTNFEDPRKPVYFMDGMMHARE-WVTTP 608
+ YP L + E + +KI E+PR+ + +D ++ E W
Sbjct: 152 NNSMKKNYPGLRKKKEKSLAIETPRTQEIKIEQIKSEEPREEIQKLDKVLSEEEQWEVNE 211
Query: 609 VTMYSIFRLVENLRDNERDLLED 677
+ + NL + ++ E+
Sbjct: 212 KLLLESYEEENNLIEEIENIEEE 234
>08_02_1386 +
26646156-26646407,26646506-26646612,26646921-26647053,
26647162-26647356,26647906-26648259
Length = 346
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +3
Query: 456 PNLVTLVNAGKSFEGRDIKYLKI-STTNFEDPRKPVYFMDGMMHAREWVTTPVTMYSIFR 632
P L V G D++Y+ S T+ ED + + + +++WV T + ++ +
Sbjct: 48 PVLPDAVTNGCEAGNADVEYIDSESLTDLEDAGATLSTLVARLDSKDWVMTCEALNNVRQ 107
Query: 633 LVENLRDNERDLLED-IDWIILPIVNP 710
L +D ++LLE + I+ + NP
Sbjct: 108 LAIFHKDRLQELLEPLVPLIVKSVKNP 134
>02_02_0593 +
11964580-11964831,11964930-11965036,11965345-11965477,
11965586-11965780,11966330-11966683
Length = 346
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +3
Query: 456 PNLVTLVNAGKSFEGRDIKYLKI-STTNFEDPRKPVYFMDGMMHAREWVTTPVTMYSIFR 632
P L V G D++Y+ S T+ ED + + + +++WV T + ++ +
Sbjct: 48 PVLPDAVTNGCEAGNADVEYIDSESLTDLEDAGATLSTLVARLDSKDWVMTCEALNNVRQ 107
Query: 633 LVENLRDNERDLLED-IDWIILPIVNP 710
L +D ++LLE + I+ + NP
Sbjct: 108 LAIFHKDRLQELLEPLVPLIVKSVKNP 134
>11_03_0032 - 9105130-9105286,9105321-9105384,9106355-9106487
Length = 117
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = -1
Query: 455 ISSGNFFHV-LVYLSVTRIILKDHSVISVSPPFRQ-ILFVLLQNFRNIFYFQIILQTVII 282
+ +G F +V +YL+V+ +LK H+ + PF+ I+ LL N ++ Y + L+TV++
Sbjct: 30 METGIFIYVRALYLTVSAELLKTHARMRAFVPFKNYIVCHLLLNSQSRQYEECNLKTVVL 89
>08_01_0064 +
444888-444959,445073-445277,445736-445901,446029-446251,
446982-447058,447370-447557,447845-447942,448202-448335,
448421-448555,448832-448960,449263-449632,449897-450018,
450155-450274,450396-450626,450706-450894,450978-451089,
451193-451438
Length = 938
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 387 MIFQDY-PRYAEVNQYMEEIAARYPNLVTLVNAGKSFEGR 503
+I Q Y P Y + +++A RY + + ++N K+FE R
Sbjct: 309 IIVQRYDPTYEATKLHFDDVAQRYGHPIIILNLTKTFEKR 348
>04_04_1679 + 35316170-35316628,35317064-35317219
Length = 204
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 168 RESPHHPGLEAQHR--RQHVSSKYRVYRRTRSLLKRE 64
RE P HPG+ + R +Q ++Y+ ++ R L KR+
Sbjct: 108 RERPPHPGIRKEFRWVKQEDGTEYQGMKKLRILAKRQ 144
>04_04_1634 +
34937087-34937198,34937652-34937790,34938263-34938334,
34938414-34938546,34938591-34938730,34939478-34939585,
34939650-34939720,34940297-34940545,34940618-34940823,
34940894-34941026,34941099-34941101,34941136-34941293,
34941420-34941683,34941869-34942114
Length = 677
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -2
Query: 619 YIVTGVVTHSRAC-IMPSMK*TGLRGSSKFVVDIFKYLMSRPSKLFPALTR 470
+++TG +T SR+C + PS++ + S + +I + S K P L+R
Sbjct: 304 FVITGAITASRSCKLKPSIRISSWNRSKSWSDEITVLIDSDMLKSLPKLSR 354
>01_07_0307 + 42647006-42647202,42647287-42647866
Length = 258
Score = 27.9 bits (59), Expect = 9.5
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = -1
Query: 599 DPFTSVHHAIHEVNWFARILE 537
DPFT++ HA+H +N+ +++
Sbjct: 227 DPFTALKHAVHVMNFLTMLID 247
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,749,933
Number of Sequences: 37544
Number of extensions: 397876
Number of successful extensions: 1105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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