Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19f18f
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   5.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.5  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   7.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.6  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 521 LQIFDVSPLEAFPCVD*GHQIWISSGNFF 435
           +++FD   L+A   V+ G  +W+S  +FF
Sbjct: 395 MKVFDELLLDADWSVNAGMWMWLSCSSFF 423


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = -2

Query: 286 LSKVSKNSLDC 254
           L+K+++NSLDC
Sbjct: 554 LNKITRNSLDC 564


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = -2

Query: 286 LSKVSKNSLDC 254
           L+K+++NSLDC
Sbjct: 554 LNKITRNSLDC 564


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 333 LKEHEEDLAKWRRNRNNRMIFQDYPRYAEVNQYMEE 440
           L E EE++   +R++     ++   R+A+V   +EE
Sbjct: 129 LTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEE 164


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -1

Query: 548 RILEVCSRYLQIFDVSPLEAFPCVD*GHQIWISSGNFFHVLVYLSVTRIIL 396
           R + VC+  L +FD+        ++  H I +++      LV L+V  I L
Sbjct: 146 RTVPVCAPKLHVFDLKTSNHLKQIEIPHDIAVNATTGKGGLVSLAVQAIDL 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,625
Number of Sequences: 438
Number of extensions: 4426
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)