Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19f17r
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   4.2  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    26   5.5  
SPAC24H6.02c |||TIM23 translocase complex subunit Tim15|Schizosa...    26   5.5  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   9.7  
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c...    25   9.7  

>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 21  YRLIQSYYFCSKLKIYIHMYTYTSQLLDINSNMNLSYENRYHNDISSFP 167
           Y+L    +  +   +Y         L+  NSN  +S ++  HN IS FP
Sbjct: 52  YQLPNGEFSDNMNDLYFPFRKGNESLMTENSNYPISEQDTQHNHISDFP 100


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 678 PSLNQIRTTALPFALLPRDRIRIL*VRSVQL 770
           PS   I   ++P  L PRD +R+L  R  +L
Sbjct: 3   PSEKDIEEVSVPGVLAPRDDVRVLKTRIAKL 33


>SPAC24H6.02c |||TIM23 translocase complex subunit
           Tim15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 81  TYTSQLLDINSNMNLSYENRYHNDISSFPFHACKNTHFKLDREHITS 221
           ++T  + +  SN N S +  YHN         CKN H   D   I S
Sbjct: 79  SFTCTVCNTRSNHNFS-KQAYHNGTVLVQCPKCKNRHLMADHLKIFS 124


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 9   LILHYRLIQSYYFCSKLKIYIHMYT-YTSQLLDINSNMNLSYENRYHNDISSFPF 170
           +++HYR I  +    + K   H  + + S ++ +NS+      +++    S+FPF
Sbjct: 411 VLMHYRGISEFMTKLETKTPKHASSSHKSSIMSVNSDPTSPKVSKFDTSDSTFPF 465


>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 728 SRPNPYTVSTFSTTKSYPGEYLEQTQRVS 814
           S P P TV T ++ K   GE+L Q  RVS
Sbjct: 30  SNPQPVTVHTTNSAKGRLGEFLYQ-NRVS 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,415
Number of Sequences: 5004
Number of extensions: 55300
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)