Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19f17f
         (749 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       24   1.1  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   4.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.6  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   6.0  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 288 FGKPTNSQDALVNETKEVTAASAFNVVKEKDWSKHTKP 401
           FG   +S+ A  NE+K   +  +     E++W    KP
Sbjct: 100 FGNNLHSEKAKFNESKWQDSGESPGFTTERNWEIREKP 137


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 640 EAARVSPPRRHTRPIPVPPPEGR 708
           E   VSP    T P P PPPE R
Sbjct: 89  EKVSVSPT---TPPTPSPPPEER 108


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 253 NESSGGGGDPANGSNSFVGFVFIHTGSVNPSLISGSSF 140
           +++ GGGG   +G+N   G    H  +V    +   +F
Sbjct: 520 DDAKGGGGGSGSGNNQPPGGPSSHVSAVLTCKVCDQAF 557


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 430 GAMPWSTSWHGLVC 389
           G  PW  S HG VC
Sbjct: 468 GFGPWKPSMHGGVC 481


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,581
Number of Sequences: 336
Number of extensions: 3950
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)