Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19f17f
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0738 - 20212220-20212282,20212387-20212593,20212690-202128... 31 0.98
03_01_0577 + 4261249-4262055,4262149-4262203,4262293-4262468,426... 31 0.98
11_06_0743 + 26847652-26849424 30 1.7
11_04_0167 + 14382976-14385244,14389373-14389842 30 1.7
05_07_0141 - 27985539-27985609,27985692-27985749,27986249-279862... 29 3.0
12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356 29 3.9
06_03_1188 + 28269231-28270358 29 5.2
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 28 6.9
03_02_0992 + 13049871-13050449 28 6.9
11_06_0623 - 25607386-25607569,25608040-25608182,25608262-256085... 28 9.1
10_08_0965 + 21915842-21916906 28 9.1
06_03_0754 + 24190778-24191284,24191735-24191784,24192311-241923... 28 9.1
03_03_0001 + 13611070-13611172,13611812-13611873,13612001-136120... 28 9.1
02_02_0509 - 11064209-11064470,11065945-11066132,11066249-110664... 28 9.1
01_01_0975 - 7686297-7686458,7687117-7687245,7687754-7687831,768... 28 9.1
01_01_0573 + 4253484-4254653,4255526-4255735,4255842-4255937,425... 28 9.1
>10_08_0738 -
20212220-20212282,20212387-20212593,20212690-20212819,
20212919-20213089,20213311-20213433,20213517-20213618,
20214123-20214880
Length = 517
Score = 31.1 bits (67), Expect = 0.98
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 655 SPPRRHTRPIPVPPPEGRRMATVTSHHRSSQ 747
SPPRR P P PPP R A H R +
Sbjct: 18 SPPRRQPHPPPPPPPPLPRHALHRQHEREGE 48
>03_01_0577 +
4261249-4262055,4262149-4262203,4262293-4262468,
4262554-4262718,4262811-4263178,4263225-4263861,
4263952-4265844,4266325-4266672
Length = 1482
Score = 31.1 bits (67), Expect = 0.98
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 507 ACGTSVVKVAHQMISSRSPRGFTVASPSEDATAPDPQHYNLMARRGSKS 653
A G +VV +AH++ + R+ T+A A +H +LMARRG S
Sbjct: 790 AAGRTVVVIAHRLATVRNAD--TIAVLDRGAVVESGRHADLMARRGPYS 836
>11_06_0743 + 26847652-26849424
Length = 590
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -1
Query: 704 PSGGGTGMGRVCRRG-GETLAAST 636
P+GGG G GR CR G G+ +A ST
Sbjct: 447 PAGGGRGRGRRCRGGLGDEVARST 470
>11_04_0167 + 14382976-14385244,14389373-14389842
Length = 912
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -2
Query: 499 SPLKPS--SVPAGFGFVTEFTAVLIGAMPWSTSWHGLVCFDQSFSLTTLN 356
SPL + V GFG+ E G P S +W G+VC S+ L+
Sbjct: 324 SPLTTTLLQVAEGFGYPYELAKTWKGNDPCSPAWVGIVCTSSDVSMINLS 373
>05_07_0141 -
27985539-27985609,27985692-27985749,27986249-27986296,
27986455-27986517,27986599-27986722,27990021-27990358
Length = 233
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 486 GFKGEGAACGTSVVKVAHQMISSRSPRGFTVASPSEDAT 602
GF+ G A G VV +M + S G+ PS+D T
Sbjct: 85 GFRRAGVAVGEGVVGARRRMRGAASTVGYMSGKPSDDTT 123
>12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356
Length = 480
Score = 29.1 bits (62), Expect = 3.9
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Frame = +3
Query: 294 KPTNSQDALVNETKEVT----AASAFNVVKEKDWSKHTKPCQDVLH-GIAP--------I 434
KP + LV +++++ ++SA N +KE+ H PCQ+ G+AP
Sbjct: 239 KPPKPKRNLVEISQQISHQSSSSSAANDIKEE--KPHNPPCQEEKKSGMAPPPSPPPRPS 296
Query: 435 NTAVNSVTKPKPA-GTDDGFKGEGAACGTSVVKVAHQMISSRSPRGFTVASPSEDATA 605
+ S++ A F + + T+ A ++I SRS R A+P EDA A
Sbjct: 297 HRRARSMSITGSAKSVRFPFTRQASRSTTTTTTTAFKVIRSRSSRAAATAAPPEDAPA 354
>06_03_1188 + 28269231-28270358
Length = 375
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 108 CYLPVALTIYLKLDPEIKDGFTLPVWM-KTKPTKEFEPFAGSPPPP 242
C + L++ + + P + DG T+P + + + +E E +AG PPP
Sbjct: 5 CEAGLPLSVAVSVPPVMVDGETVPKEVEECEDEEEEEEYAGDAPPP 50
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 27 YRTYRSHLIV*EAYEASWT 83
YR++R H+I EA ASWT
Sbjct: 224 YRSHRKHMIAREAEAASWT 242
>03_02_0992 + 13049871-13050449
Length = 192
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 634 RVEAARVSPPRRHTRPIPVPPPEGRRMATVT 726
R+ V PP RH R +P PP GR +A+ +
Sbjct: 71 RIGRGGVLPPHRHRRSVP-PPSLGRGVASTS 100
>11_06_0623 -
25607386-25607569,25608040-25608182,25608262-25608513,
25609239-25609754
Length = 364
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/81 (20%), Positives = 29/81 (35%)
Frame = +3
Query: 228 SPPPPEDSFFYIRYPKSDILFGKPTNSQDALVNETKEVTAASAFNVVKEKDWSKHTKPCQ 407
SP +FF I ++ + +G PT ++ + A + V K +
Sbjct: 24 SPSQQSQAFFEIWLGQNSMQYGTPTMDTPSIAGDIVAANATAVHAAVDPAGGGKQYRTIA 83
Query: 408 DVLHGIAPINTAVNSVTKPKP 470
D L + N V + KP
Sbjct: 84 DALAAVPDANNTRRYVFRLKP 104
>10_08_0965 + 21915842-21916906
Length = 354
Score = 27.9 bits (59), Expect = 9.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 699 WWWDWNGASVPAWR 658
WWWD +G + PA R
Sbjct: 319 WWWDMDGGAAPAAR 332
>06_03_0754 +
24190778-24191284,24191735-24191784,24192311-24192383,
24192577-24192717,24193635-24194039,24194215-24194319,
24194635-24194775,24195330-24195533,24196206-24196292,
24196689-24196800,24197972-24198015
Length = 622
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/80 (25%), Positives = 39/80 (48%)
Frame = +3
Query: 144 LDPEIKDGFTLPVWMKTKPTKEFEPFAGSPPPPEDSFFYIRYPKSDILFGKPTNSQDALV 323
LDP++ F +P W + + ++ PF PE ++ + K L N ++ +
Sbjct: 533 LDPDLFTNFLIPSWFEAQGPTKYNPFT----LPE-VYWASQRKKHVSLEDIQKNIRELEL 587
Query: 324 NETKEVTAASAFNVVKEKDW 383
++T++ ASA + + KDW
Sbjct: 588 DDTRKKELASALH-AQFKDW 606
>03_03_0001 + 13611070-13611172,13611812-13611873,13612001-13612072,
13612158-13612394,13612473-13612650,13612731-13612863,
13613686-13613845,13613925-13614078,13614159-13614262,
13614354-13614512,13615399-13615467,13615543-13615611,
13615772-13615909,13616044-13616124,13616805-13616933,
13617717-13617864,13618007-13618017,13618094-13618234,
13618314-13618439,13619164-13619220,13619355-13619453,
13619540-13619762,13620236-13620480,13621325-13621438
Length = 1003
Score = 27.9 bits (59), Expect = 9.1
Identities = 25/92 (27%), Positives = 36/92 (39%)
Frame = +3
Query: 291 GKPTNSQDALVNETKEVTAASAFNVVKEKDWSKHTKPCQDVLHGIAPINTAVNSVTKPKP 470
G PT AL + +S N ++ S P Q +A + +A N KPK
Sbjct: 786 GGPTQRASALAALSSAFNPSSQKNKGNDRPKSSDGGPTQRA-SAMAALTSAFNPSAKPKS 844
Query: 471 AGTDDGFKGEGAACGTSVVKVAHQMISSRSPR 566
G + AA ++ V SS+SPR
Sbjct: 845 PPQRAGQGSQRAAAVAALSNVLTAEGSSQSPR 876
>02_02_0509 -
11064209-11064470,11065945-11066132,11066249-11066493,
11066816-11066987,11067090-11067496,11068443-11068587
Length = 472
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/55 (23%), Positives = 23/55 (41%)
Frame = +3
Query: 492 KGEGAACGTSVVKVAHQMISSRSPRGFTVASPSEDATAPDPQHYNLMARRGSKSL 656
+ GAA V H +S R PR + + + P+ N+ + GS ++
Sbjct: 35 RSHGAAAAAPVASKGHLFLSQRQPRTSNLEAVGDVTAVPEDYTENMPSSSGSTNV 89
>01_01_0975 -
7686297-7686458,7687117-7687245,7687754-7687831,
7688011-7688469,7690648-7690788,7691771-7692421
Length = 539
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 27 YRTYRSHLIV*EAYEASWT 83
YR++R HL+ EA ASWT
Sbjct: 266 YRSHRKHLMAREAEAASWT 284
>01_01_0573 +
4253484-4254653,4255526-4255735,4255842-4255937,
4256034-4256255,4256829-4257023,4257097-4257243,
4257323-4257472,4257762-4257892,4257978-4258194
Length = 845
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 117 PVALTIYLKLDPEIKDGFTLPVWMKTKPTKEFEPFAGSPP 236
PV L+ LK E D F P+ MK KP + + +PP
Sbjct: 758 PVLLSSDLKKKAETVDRFCKPIMMKPKPAPKPQTPPQTPP 797
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,302,382
Number of Sequences: 37544
Number of extensions: 495766
Number of successful extensions: 2461
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2446
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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