Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19f17f
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80838-2|AAL02517.1|  297|Caenorhabditis elegans Abnormal cell l...    30   1.5  
U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell l...    30   1.5  
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p...    30   2.0  
U50312-1|AAA92318.1|  285|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U28971-2|AAA68377.1|  180|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    29   2.7  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    29   2.7  
AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical...    29   3.5  
AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical...    29   3.5  
U80439-9|AAO38675.1|  661|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U40954-8|AAM69083.2|  471|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z99286-2|CAH60793.1|  310|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF003389-4|AAN63407.1|  598|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ...    28   6.2  

>U80838-2|AAL02517.1|  297|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform a protein.
          Length = 297

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 171 TLPVWMKTKPTKEFEPFAGSPPPPEDSFFYIRY-PKSDILFGKPTNSQDALVN 326
           T P+   +     +   A +PPPP    + I Y P  D+   K TN++  + N
Sbjct: 184 TTPIHWTSSSQNHYRTMAPAPPPPPGKNYQITYTPLDDLTDQKSTNTKSDVEN 236


>U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform b protein.
          Length = 597

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 171 TLPVWMKTKPTKEFEPFAGSPPPPEDSFFYIRY-PKSDILFGKPTNSQDALVN 326
           T P+   +     +   A +PPPP    + I Y P  D+   K TN++  + N
Sbjct: 484 TTPIHWTSSSQNHYRTMAPAPPPPPGKNYQITYTPLDDLTDQKSTNTKSDVEN 536


>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
            protein C34D4.14 protein.
          Length = 2761

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
 Frame = +3

Query: 387  KHTKPCQDVLHGIAPINTAVNSVTKPKPAGTDDGFKGEGAACGTSVVKVAHQMISSRSPR 566
            +H KP    L   A       SV    PAGT       G A G   +   + +   +   
Sbjct: 1672 QHNKPAASALSRFA-------SVKNTTPAGTPSSGGSSGGAIGKKSMSTTNLVDERQKTS 1724

Query: 567  GFTVASPSEDATAPDPQHY-----NLMAR 638
            G +VAS  + A+A   QH      NL+AR
Sbjct: 1725 GPSVASTGQAASAESLQHQTPSLENLLAR 1753


>U50312-1|AAA92318.1|  285|Caenorhabditis elegans Hypothetical
           protein B0222.1 protein.
          Length = 285

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
 Frame = +3

Query: 75  SWTSLFLISI*CYLPVALTIYLKLDPEIKDGFTL----PVWMKTKPTKEFEPFAGSPPPP 242
           SW ++ LI +   L + L ++       +D   +    PV+  T  T  F    G PPPP
Sbjct: 179 SWVTIILIIVGIVLIIILCVWCNSKGYCRDETVIVTEVPVFATTTTTHTFTTNNGPPPPP 238

Query: 243 EDSFFYIRYPKSDILFGKP 299
               F    P S  ++  P
Sbjct: 239 GFQGFQQGPPPSAPVYSAP 257


>U28971-2|AAA68377.1|  180|Caenorhabditis elegans Hypothetical
           protein B0244.9 protein.
          Length = 180

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -2

Query: 538 CATFTTEVPHAA---PSPLKPSSVPAGFGFVTEFTAVLIGAMPWSTSWHGLVCF 386
           CA+   E  H     P+  +P+ + AGF +  E   +LI  +P      GL CF
Sbjct: 6   CASVDLEYVHVEDENPNENEPARLRAGFEWAAEPDEILIAGVPTKFIMFGLSCF 59


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = +3

Query: 222  AGSPPPPEDSFFYIRYPKSDILFGKPTNSQDALVNETKEVTAASAFNVVKEKDWSKHTKP 401
            +GSP P E+   ++   +S      P  S+D++ +  ++ T  +      E + S    P
Sbjct: 5532 SGSPLPREEDDSHVI--ESHEYTSSPVPSEDSVKHVIEKTTTTTVTEERYEPEDSHSPVP 5589

Query: 402  CQDVLHGIAPINTAVNSVT 458
             +D +HG     T   +VT
Sbjct: 5590 SEDDVHGFVKTTTTTTTVT 5608


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = +3

Query: 222  AGSPPPPEDSFFYIRYPKSDILFGKPTNSQDALVNETKEVTAASAFNVVKEKDWSKHTKP 401
            +GSP P E+   ++   +S      P  S+D++ +  ++ T  +      E + S    P
Sbjct: 5532 SGSPLPREEDDSHVI--ESHEYTSSPVPSEDSVKHVIEKTTTTTVTEERYEPEDSHSPVP 5589

Query: 402  CQDVLHGIAPINTAVNSVT 458
             +D +HG     T   +VT
Sbjct: 5590 SEDDVHGFVKTTTTTTTVT 5608


>AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6a protein.
          Length = 450

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 365 RQGERLVETHQAVPRCAPRHRANQHRSELCY 457
           RQ   LV +HQAV RC   +  N++R +L Y
Sbjct: 382 RQSNVLVISHQAVLRCILAYFTNKNRDDLPY 412


>AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6b protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 365 RQGERLVETHQAVPRCAPRHRANQHRSELCY 457
           RQ   LV +HQAV RC   +  N++R +L Y
Sbjct: 388 RQSNVLVISHQAVLRCILAYFTNKNRDDLPY 418


>U80439-9|AAO38675.1|  661|Caenorhabditis elegans Hypothetical
           protein C01G8.9b protein.
          Length = 661

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 608 GPSAL*SDGASRQQESPRHAGTLAPFQSHHQKEEE 712
           G   L  + +SR   S   A  + P+++HH+ EEE
Sbjct: 547 GNGTLECETSSRPLSSEAAAAVITPYENHHKNEEE 581


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
            C01G8.9a protein.
          Length = 1724

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 608  GPSAL*SDGASRQQESPRHAGTLAPFQSHHQKEEE 712
            G   L  + +SR   S   A  + P+++HH+ EEE
Sbjct: 1610 GNGTLECETSSRPLSSEAAAAVITPYENHHKNEEE 1644


>U40954-8|AAM69083.2|  471|Caenorhabditis elegans Hypothetical
           protein ZK813.5 protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 461 FRNRVHCGVDWRDAVEHILARLGVF 387
           FRNR  CG+D    + +++ARL V+
Sbjct: 177 FRNRYVCGIDGGGPIGYVIARLVVY 201


>Z99286-2|CAH60793.1|  310|Caenorhabditis elegans Hypothetical
           protein Y7A9C.8 protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -2

Query: 556 REDII*CATFTTEVPHAAPSPLKPSSVPAGFGFVTEFTAVLIGAMPW 416
           +E II C  F++ V +    P KP   P  +GF+  F A+L  +MP+
Sbjct: 159 KEFIILCV-FSSRVKYERVDPYKP---PCYYGFILFFHALLFFSMPF 201


>AF003389-4|AAN63407.1|  598|Caenorhabditis elegans Hypothetical
           protein F23H11.4b protein.
          Length = 598

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 652 VSPPRRHTRPIPVPPP 699
           +SPP+RH  P P PPP
Sbjct: 76  MSPPQRHAPPPPRPPP 91


>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
           protein F23H11.4a protein.
          Length = 1003

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 652 VSPPRRHTRPIPVPPP 699
           +SPP+RH  P P PPP
Sbjct: 76  MSPPQRHAPPPPRPPP 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,071,876
Number of Sequences: 27780
Number of extensions: 370769
Number of successful extensions: 1542
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)