Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19f16r
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    96   3e-22
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.62 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.3  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   7.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 96.3 bits (229), Expect = 3e-22
 Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 16/218 (7%)
 Frame = -3

Query: 615 CGGNILNQRSILSAAHCPYGDATGRWRIRVG-----STFANSGGVVHNVNRIIIHPNYNR 451
           CG  I+++R +L+AAHC   + T +  I VG     S    +  V+H++N++IIHP Y+ 
Sbjct: 188 CGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDI 247

Query: 450 RTAD----SDLCILRSNSNIAYNNNVRPINIAGANY-NLGDNQVVWAAGWGATSLGGSNS 286
              D    +D+ +L++  +I + + V P  +   ++ +      V   GWG TS  G  S
Sbjct: 248 IEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSFNGMLS 307

Query: 285 EQLRHVQVWTINQNACVQRYRPINRAITANMLCSGVLDVGGRDQCQGDSGGPLLHNR--- 115
             L+   +  + Q  C + Y      I  N +C+      G+D CQ DSGGP+L      
Sbjct: 308 HILQKTTLNMLTQVECYKYY----GNIMVNAMCA---YAKGKDACQMDSGGPVLWQNPRT 360

Query: 114 ---VLVGVCSWGQYCADRRFPGVNVRVSRFTSWIQSNS 10
              V +G+ SWG  C   ++P  N +V  +  WI S +
Sbjct: 361 KRLVNIGIISWGAECG--KYPNGNTKVGSYIDWIVSQT 396



 Score = 31.1 bits (67), Expect = 0.013
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 718 NPQRIIGGSTTNINQYPGIA 659
           NP RI+GG+ T IN++P +A
Sbjct: 157 NPSRIVGGTNTGINEFPMMA 176


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 22/73 (30%), Positives = 33/73 (45%)
 Frame = +1

Query: 322  SSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMNDNSVHVMHNT 501
            ++  ++V+T +   T+ IN     VIS  G T     +  SSTS+      NS+ V  + 
Sbjct: 825  TTEQSVVVTNV---TTTINTPTTSVISMSGTTVPITSLPASSTSI------NSITVEKDV 875

Query: 502  PTVGKGGTNTNTP 540
                K    TNTP
Sbjct: 876  INDVKTQITTNTP 888


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 442 SSTSVIVG-MNDNSVHVMHNTPTVGKGGTNTNTPTACSVTVWTVSGT 579
           SS  V +G  ND++  +   +P+   GG+++ +P++ S    +VS T
Sbjct: 60  SSGGVELGWFNDSAAAITSTSPSYPGGGSSSPSPSSPSSFFSSVSPT 106


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 69  DGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDH 167
           D + S +P  R++ G   G     S PGTGR+H
Sbjct: 374 DLRMSPLPSIRNRSGLVSGS----STPGTGREH 402


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +1

Query: 319 TSSPNNLVITKIVIGTSNINRTNVVVISY 405
           +S+  N ++  +++GT  I  + +++ISY
Sbjct: 2   SSTEANELVMSVIVGTVVIVSSLIILISY 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,658
Number of Sequences: 438
Number of extensions: 5901
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)