Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19f15r
(568 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC151244-1|AAI51245.1| 1039|Homo sapiens FERM domain containing ... 30 6.5
AL365495-1|CAI13296.1| 1039|Homo sapiens novel protein (FLJ10210... 30 6.5
AL157392-5|CAI13127.1| 1039|Homo sapiens novel protein (FLJ10210... 30 6.5
AB037715-1|BAA92532.1| 1051|Homo sapiens KIAA1294 protein protein. 30 6.5
X67016-1|CAA47406.1| 198|Homo sapiens amphiglycan protein. 29 8.6
D79206-1|BAA19613.1| 198|Homo sapiens ryudocan core protein pro... 29 8.6
D13292-1|BAA02550.1| 198|Homo sapiens ryudocan core protein pre... 29 8.6
CR542074-1|CAG46871.1| 198|Homo sapiens SDC4 protein. 29 8.6
CR542045-1|CAG46842.1| 198|Homo sapiens SDC4 protein. 29 8.6
BC030805-1|AAH30805.1| 198|Homo sapiens syndecan 4 protein. 29 8.6
AL021578-7|CAA16520.1| 198|Homo sapiens syndecan 4 (amphiglycan... 29 8.6
AK223243-1|BAD96963.1| 198|Homo sapiens syndecan 4 precursor va... 29 8.6
AK222695-1|BAD96415.1| 198|Homo sapiens syndecan 4 precursor va... 29 8.6
>BC151244-1|AAI51245.1| 1039|Homo sapiens FERM domain containing 4A
protein.
Length = 1039
Score = 29.9 bits (64), Expect = 6.5
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 196 SSRRVHELKIHXXXXXXXXXXXXPRELCRSSDADSPDASTGRRREPHVDNPRVNCSS-TA 372
S R+H L +H + L +D SPD T R R + +P +CSS T+
Sbjct: 694 SPTRLHSLALHFRHRSSSLESQG-KLLGSENDTGSPDFYTPRTRSSNGSDPMDDCSSCTS 752
Query: 373 HNKA 384
H+ +
Sbjct: 753 HSSS 756
>AL365495-1|CAI13296.1| 1039|Homo sapiens novel protein (FLJ10210)
protein.
Length = 1039
Score = 29.9 bits (64), Expect = 6.5
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 196 SSRRVHELKIHXXXXXXXXXXXXPRELCRSSDADSPDASTGRRREPHVDNPRVNCSS-TA 372
S R+H L +H + L +D SPD T R R + +P +CSS T+
Sbjct: 694 SPTRLHSLALHFRHRSSSLESQG-KLLGSENDTGSPDFYTPRTRSSNGSDPMDDCSSCTS 752
Query: 373 HNKA 384
H+ +
Sbjct: 753 HSSS 756
>AL157392-5|CAI13127.1| 1039|Homo sapiens novel protein (FLJ10210)
protein.
Length = 1039
Score = 29.9 bits (64), Expect = 6.5
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 196 SSRRVHELKIHXXXXXXXXXXXXPRELCRSSDADSPDASTGRRREPHVDNPRVNCSS-TA 372
S R+H L +H + L +D SPD T R R + +P +CSS T+
Sbjct: 694 SPTRLHSLALHFRHRSSSLESQG-KLLGSENDTGSPDFYTPRTRSSNGSDPMDDCSSCTS 752
Query: 373 HNKA 384
H+ +
Sbjct: 753 HSSS 756
>AB037715-1|BAA92532.1| 1051|Homo sapiens KIAA1294 protein protein.
Length = 1051
Score = 29.9 bits (64), Expect = 6.5
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 196 SSRRVHELKIHXXXXXXXXXXXXPRELCRSSDADSPDASTGRRREPHVDNPRVNCSS-TA 372
S R+H L +H + L +D SPD T R R + +P +CSS T+
Sbjct: 706 SPTRLHSLALHFRHRSSSLESQG-KLLGSENDTGSPDFYTPRTRSSNGSDPMDDCSSCTS 764
Query: 373 HNKA 384
H+ +
Sbjct: 765 HSSS 768
>X67016-1|CAA47406.1| 198|Homo sapiens amphiglycan protein.
Length = 198
Score = 29.5 bits (63), Expect = 8.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 14 IYRSEKKDKGSFEINTRIIN*KNGENEFF 100
+YR +KKD+GS+++ + I K NEF+
Sbjct: 169 MYRMKKKDEGSYDLGKKPIYKKAPTNEFY 197
>D79206-1|BAA19613.1| 198|Homo sapiens ryudocan core protein
protein.
Length = 198
Score = 29.5 bits (63), Expect = 8.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 14 IYRSEKKDKGSFEINTRIIN*KNGENEFF 100
+YR +KKD+GS+++ + I K NEF+
Sbjct: 169 MYRMKKKDEGSYDLGKKPIYKKAPTNEFY 197
>D13292-1|BAA02550.1| 198|Homo sapiens ryudocan core protein
precursor protein.
Length = 198
Score = 29.5 bits (63), Expect = 8.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 14 IYRSEKKDKGSFEINTRIIN*KNGENEFF 100
+YR +KKD+GS+++ + I K NEF+
Sbjct: 169 MYRMKKKDEGSYDLGKKPIYKKAPTNEFY 197
>CR542074-1|CAG46871.1| 198|Homo sapiens SDC4 protein.
Length = 198
Score = 29.5 bits (63), Expect = 8.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 14 IYRSEKKDKGSFEINTRIIN*KNGENEFF 100
+YR +KKD+GS+++ + I K NEF+
Sbjct: 169 MYRMKKKDEGSYDLGKKPIYKKAPTNEFY 197
>CR542045-1|CAG46842.1| 198|Homo sapiens SDC4 protein.
Length = 198
Score = 29.5 bits (63), Expect = 8.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 14 IYRSEKKDKGSFEINTRIIN*KNGENEFF 100
+YR +KKD+GS+++ + I K NEF+
Sbjct: 169 MYRMKKKDEGSYDLGKKPIYKKAPTNEFY 197
>BC030805-1|AAH30805.1| 198|Homo sapiens syndecan 4 protein.
Length = 198
Score = 29.5 bits (63), Expect = 8.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 14 IYRSEKKDKGSFEINTRIIN*KNGENEFF 100
+YR +KKD+GS+++ + I K NEF+
Sbjct: 169 MYRMKKKDEGSYDLGKKPIYKKAPTNEFY 197
>AL021578-7|CAA16520.1| 198|Homo sapiens syndecan 4 (amphiglycan,
ryudocan) protein.
Length = 198
Score = 29.5 bits (63), Expect = 8.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 14 IYRSEKKDKGSFEINTRIIN*KNGENEFF 100
+YR +KKD+GS+++ + I K NEF+
Sbjct: 169 MYRMKKKDEGSYDLGKKPIYKKAPTNEFY 197
>AK223243-1|BAD96963.1| 198|Homo sapiens syndecan 4 precursor
variant protein.
Length = 198
Score = 29.5 bits (63), Expect = 8.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 14 IYRSEKKDKGSFEINTRIIN*KNGENEFF 100
+YR +KKD+GS+++ + I K NEF+
Sbjct: 169 MYRMKKKDEGSYDLGKKPIYKKAPTNEFY 197
>AK222695-1|BAD96415.1| 198|Homo sapiens syndecan 4 precursor
variant protein.
Length = 198
Score = 29.5 bits (63), Expect = 8.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 14 IYRSEKKDKGSFEINTRIIN*KNGENEFF 100
+YR +KKD+GS+++ + I K NEF+
Sbjct: 169 MYRMKKKDEGSYDLGKKPIYKKAPTNEFY 197
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,122,685
Number of Sequences: 237096
Number of extensions: 1277623
Number of successful extensions: 2471
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2471
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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