Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19f14f
(737 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.84
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.84
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.84
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 23 3.4
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 23 3.4
DQ372925-1|ABD17350.1| 596|Tribolium castaneum telomerase rever... 22 4.5
AJ829922-1|CAH25640.1| 193|Tribolium castaneum twist bHLH trans... 22 4.5
DQ855492-1|ABH88179.1| 251|Tribolium castaneum chemosensory pro... 22 5.9
EF222294-1|ABN79654.1| 451|Tribolium castaneum ecdysis triggeri... 21 7.9
DQ855491-1|ABH88178.1| 144|Tribolium castaneum chemosensory pro... 21 7.9
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 24.6 bits (51), Expect = 0.84
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 416 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 312
LP V + + LL T FN FM+ +V L + L++
Sbjct: 264 LPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNY 298
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 24.6 bits (51), Expect = 0.84
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 416 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 312
LP V + + LL T FN FM+ +V L + L++
Sbjct: 264 LPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNY 298
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 24.6 bits (51), Expect = 0.84
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 416 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 312
LP V + + LL T FN FM+ +V L + L++
Sbjct: 264 LPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNY 298
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 22.6 bits (46), Expect = 3.4
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -1
Query: 419 RLPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 312
++P + + L+ T FN FM+ +V L + L++
Sbjct: 263 KIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNY 298
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 22.6 bits (46), Expect = 3.4
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -1
Query: 419 RLPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 312
++P + + L+ T FN FM+ +V L + L++
Sbjct: 263 KIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNY 298
>DQ372925-1|ABD17350.1| 596|Tribolium castaneum telomerase reverse
transcriptase protein.
Length = 596
Score = 22.2 bits (45), Expect = 4.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 527 LQPNH*IKHRGKIW 568
L PN+ I+H+ K+W
Sbjct: 407 LPPNYEIRHKFKLW 420
>AJ829922-1|CAH25640.1| 193|Tribolium castaneum twist bHLH
transcription factor protein.
Length = 193
Score = 22.2 bits (45), Expect = 4.5
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +1
Query: 187 VQVFGLEGRYASALFSAASKTKALDIVEKELGQFQQSIKTDAKLKEF 327
+Q L RY L+ S ALD+ +G + D LK F
Sbjct: 134 IQTLKLAARYIDFLYHVLSNENALDV--DLIGNVCSYVVRDKLLKAF 178
>DQ855492-1|ABH88179.1| 251|Tribolium castaneum chemosensory
protein 6 protein.
Length = 251
Score = 21.8 bits (44), Expect = 5.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 607 LQLTAKVDPSLIGGMVVSIG 666
LQ T +L+GG+V S+G
Sbjct: 208 LQATVSFGTNLVGGIVRSLG 227
>EF222294-1|ABN79654.1| 451|Tribolium castaneum ecdysis triggering
hormone receptorisoform B protein.
Length = 451
Score = 21.4 bits (43), Expect = 7.9
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -3
Query: 555 LCLI*WFGCNNFTSYFTPVGSHHNLKSINDSLQFV 451
+CL+ WF FTS + + + ++ S+ FV
Sbjct: 190 ICLLAWFIAALFTSPILAITQYGPEEYVDGSIVFV 224
>DQ855491-1|ABH88178.1| 144|Tribolium castaneum chemosensory
protein 5 protein.
Length = 144
Score = 21.4 bits (43), Expect = 7.9
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +1
Query: 598 NETLQLTAKVDPSLIGGMVVSIGDKYVDMSVASKVKE 708
NE QL AK DP I I D Y D S K+
Sbjct: 109 NEWNQLVAKYDPDGIYRKQYEIDDDY-DYSELDSAKK 144
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,194
Number of Sequences: 336
Number of extensions: 3798
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -