Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19f13r
(818 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0306 + 2499350-2499678,2500041-2500137 31 1.1
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 31 1.5
01_02_0007 + 10132380-10133201 29 3.4
12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916 29 4.4
04_04_1413 - 33386049-33386339 29 4.4
11_06_0156 + 20748472-20748951 29 5.9
08_02_0590 + 19044193-19044364,19044464-19045047,19045085-190460... 29 5.9
05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515 29 5.9
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 29 5.9
04_04_1156 - 31319747-31320085,31320556-31320706,31320795-313210... 29 5.9
02_04_0166 - 20508656-20509092,20509282-20509372 29 5.9
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 29 5.9
01_01_0082 + 625198-625719 29 5.9
10_07_0168 + 13758189-13758418,13758888-13759041,13760576-137610... 28 7.8
09_04_0130 - 14905044-14905505,14905865-14905933,14906000-149061... 28 7.8
05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371 28 7.8
>01_01_0306 + 2499350-2499678,2500041-2500137
Length = 141
Score = 31.1 bits (67), Expect = 1.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 45 TLAKPAGWPLWQP*ADPNDVIPI 113
TL + WP+WQP D N ++P+
Sbjct: 119 TLGELMDWPIWQPSQDLNSILPV 141
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +3
Query: 594 ERVLVSKEAPQMEVLPFVSAITSPARWG*APAFAAEPPTILV 719
E + AP LPF S + + AR G APA +A P LV
Sbjct: 2 EATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>01_02_0007 + 10132380-10133201
Length = 273
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = +3
Query: 69 PLWQP*ADPNDVIPI---S*RLPPLPMVRGPPESPLQVLRPLEPST---QRVEAMITLFP 230
PL QP DPN+ P+ PP P+ + P SP Q L +P+T Q++ A I+ P
Sbjct: 187 PLPQP--DPNNPQPLPQPDPNAPPQPLPQPDPNSPPQPLPQPDPNTPPGQQINAKISSQP 244
Query: 231 N 233
+
Sbjct: 245 D 245
>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
Length = 259
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 476 LDIGGGDPGASGEDVSCAKSEGELTSLGSPG 568
+++ G D S SC S+G ++ GSPG
Sbjct: 169 MEVDGNDDSDSSSPTSCVSSDGRSSAGGSPG 199
>04_04_1413 - 33386049-33386339
Length = 96
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = -2
Query: 199 CVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQRGHPAG 56
C DGS GR +G GG G GG G G GC G +G
Sbjct: 50 CADGSGGRRRRTGGGGG----GGGGGGGCGGGGGGGGGGGCGGGGGSG 93
>11_06_0156 + 20748472-20748951
Length = 159
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 292 CWLPKQHRRSFRSRQPRPKY 351
CWLP+ RRS R R R K+
Sbjct: 6 CWLPRACRRSMRHRSCRTKF 25
>08_02_0590 +
19044193-19044364,19044464-19045047,19045085-19046059,
19046219-19046605
Length = 705
Score = 28.7 bits (61), Expect = 5.9
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = -2
Query: 697 AANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTAN 518
A N GA A V+ + +GR S+ +L + + AA WR+RR Q AL
Sbjct: 49 AVNGGA----AEDVVVIASGRRSVGEPTLDVSEMLLQAAETWRSRRTQREARPDALPPRP 104
Query: 517 IFS---GGTRVTTSNVQMHGSYNM 455
+ + GG+ TS + G M
Sbjct: 105 VAADGRGGSGEGTSRARGRGEEGM 128
>05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515
Length = 785
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 145 LTIGSGGSRQLIGITSFGSAQGCQRGHPAGFARVTSFNSW 26
+ +G GG ++ TS A G R HP FA+ F SW
Sbjct: 13 VAVGGGGGQKTP--TSPRGAPGADRRHPRPFAKNLDFASW 50
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 625 RWKFCHSSVRSQVQQDGGEHQRLRQNHPQSW 717
R + HS GG HQR R +HP +W
Sbjct: 543 RHRHGHSHGDHHHHYHGGHHQRRRHHHPPAW 573
>04_04_1156 -
31319747-31320085,31320556-31320706,31320795-31321026,
31321121-31321331,31321646-31321764,31321835-31322032,
31322163-31322364,31322456-31322832,31322937-31323007,
31326264-31326329,31326414-31326479,31326761-31326835,
31326944-31327018,31327115-31327186,31327683-31327904,
31328012-31328083,31328425-31328496,31329410-31329481,
31329716-31329896,31332132-31332237
Length = 992
Score = 28.7 bits (61), Expect = 5.9
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -2
Query: 223 NVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQRGHPA-GFAR 47
N + ST C GS ++ + + GGPLT GS R + G A G P G +
Sbjct: 369 NCLQRSTPCFLGSPKTASFAVNCGGPLTSGSDNLRYQSDEVNLGDASYYITGEPTWGVST 428
Query: 46 VTSF 35
V F
Sbjct: 429 VGRF 432
>02_04_0166 - 20508656-20509092,20509282-20509372
Length = 175
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 196 VDGSNGRSTCSGDSGGPLTIGSGGSR-QLIGITSFGSAQGCQRGHPA 59
V GS+ R + G SGG G GG+R Q+ + + G+A RG+ A
Sbjct: 31 VRGSHARRSKRGISGGAGCGGGGGARGQVTAVGASGAAAEDARGYDA 77
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 69 PLWQP*ADPNDVIPIS*RLPPLPMVRGPPESPLQVLRP 182
P + P A P + + + PP+P + PP P Q P
Sbjct: 322 PYYAPPAQPTETMHQQYQAPPVPQPQAPPAPPQQYQTP 359
>01_01_0082 + 625198-625719
Length = 173
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/50 (38%), Positives = 21/50 (42%)
Frame = +3
Query: 48 LAKPAGWPLWQP*ADPNDVIPIS*RLPPLPMVRGPPESPLQVLRPLEPST 197
L P G P DV+P PP P V PP SP V P P+T
Sbjct: 40 LPSPCGTTCTYASPPPPDVLPTPVYYPPPPPVYYPPPSPPPVAYP-PPTT 88
>10_07_0168 +
13758189-13758418,13758888-13759041,13760576-13761042,
13761361-13761478,13761566-13761622,13761906-13762082,
13762225-13762365,13762458-13762531,13764583-13764738,
13764822-13764895,13764992-13765068
Length = 574
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/76 (28%), Positives = 32/76 (42%)
Frame = -2
Query: 658 VIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNV 479
VIA T + + S +NT S A C RR+ +A G A I G+ + S+
Sbjct: 160 VIAATYVDSMLGARSSTSNTESTAAVSCVPARRSMIE--IMAFGVAKILVRGSNMMKSDG 217
Query: 478 QMHGSYNMDTLHNDVA 431
G + L +VA
Sbjct: 218 AASGERKIGILAFEVA 233
>09_04_0130 -
14905044-14905505,14905865-14905933,14906000-14906104,
14906625-14906690,14907080-14907268,14907353-14907439,
14907597-14908118
Length = 499
Score = 28.3 bits (60), Expect = 7.8
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Frame = -2
Query: 202 LCVDGSNGRSTCSGDSGG-------PLTIGSGGS----RQLIGITSFGSAQGCQRG--HP 62
+ + G GRS G GG PLT+GSGGS + L+ + SA G G +
Sbjct: 125 MMLQGLGGRSPAGGGGGGGDGGLLLPLTLGSGGSGGDVQALLKAAAANSAGGGDAGGVYG 184
Query: 61 AGFA 50
GFA
Sbjct: 185 GGFA 188
>05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371
Length = 1165
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 148 PLTIGSGGSRQLIGITSFGSAQGCQRGHPAGFARVTSFNSW 26
PL+ G+ GSR L+ + G A+G + H ++ F+ W
Sbjct: 304 PLSSGASGSRVLLTTRNEGVARGMRAQHLHPVEKLDRFDGW 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,893,060
Number of Sequences: 37544
Number of extensions: 477279
Number of successful extensions: 2395
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2388
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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