Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19f11f
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical p...    29   3.9  
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    28   9.0  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    28   9.0  

>U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical
           protein C49H3.6b protein.
          Length = 498

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = -3

Query: 333 KPTPPPVRRTLANCVDPRTRTALTRLPAGAVNLTLTTRELIVAARLTTKLRKSLSLEV-I 157
           +P PPPV R   +   P  ++ L R P  AV   +    +      ++ + +++S  V  
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPVKK 415

Query: 156 LPIL--KALALSVDLGSATSLVDTATIAVNTN 67
            P++   + A+     +AT+ + T ++  NT+
Sbjct: 416 TPVMGVSSTAVRRPQSAATTTMPTTSVITNTS 447


>U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical
           protein C49H3.6a protein.
          Length = 552

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = -3

Query: 333 KPTPPPVRRTLANCVDPRTRTALTRLPAGAVNLTLTTRELIVAARLTTKLRKSLSLEV-I 157
           +P PPPV R   +   P  ++ L R P  AV   +    +      ++ + +++S  V  
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPVKK 415

Query: 156 LPIL--KALALSVDLGSATSLVDTATIAVNTN 67
            P++   + A+     +AT+ + T ++  NT+
Sbjct: 416 TPVMGVSSTAVRRPQSAATTTMPTTSVITNTS 447


>Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical
           protein Y41E3.15 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
 Frame = +1

Query: 400 GTLKCIFWTFTCKYTKFLFFRLHKKFVLPIF--LINNSRIYFEASLSFFFG 546
           GT+    W  +C  T FLF        LP +  LI     YF   LS  +G
Sbjct: 111 GTIVLTTWCTSCACTLFLFINRIVNITLPQYSDLIEAKLAYFSIILSIIYG 161


>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +2

Query: 734 VRCHLSCMSILTF 772
           ++CHL+C+SILTF
Sbjct: 583 IQCHLTCLSILTF 595


>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +2

Query: 734 VRCHLSCMSILTF 772
           ++CHL+C+SILTF
Sbjct: 583 IQCHLTCLSILTF 595


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform b
           protein.
          Length = 1250

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 651 THH*ALSQTNNTIEIIGSLDFYFEINL*CCHSNLQSEKKRQGSFEINTRIIN 496
           T+H  LS++  T+E+IG L    +    C  +N  + K +     +N   IN
Sbjct: 217 TYHLPLSKSGTTLEVIGQLQLSDDRVAVCYRTNQPTPKFKLTIMTLNDNTIN 268


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform a
           protein.
          Length = 2456

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 651 THH*ALSQTNNTIEIIGSLDFYFEINL*CCHSNLQSEKKRQGSFEINTRIIN 496
           T+H  LS++  T+E+IG L    +    C  +N  + K +     +N   IN
Sbjct: 217 TYHLPLSKSGTTLEVIGQLQLSDDRVAVCYRTNQPTPKFKLTIMTLNDNTIN 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,880,513
Number of Sequences: 27780
Number of extensions: 312091
Number of successful extensions: 699
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)