Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19f10r
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...   228   7e-61
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    31   0.16 
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    31   0.21 
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    28   1.9  
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    27   3.4  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   5.9  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   7.8  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score =  228 bits (558), Expect = 7e-61
 Identities = 110/150 (73%), Positives = 129/150 (86%)
 Frame = -3

Query: 773 FAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQ 594
           FAHLDATTVLSR+I+ELGIYPAVDPLDS SR+MDP I+G EHYN+A  VQ++LQ+YKSLQ
Sbjct: 372 FAHLDATTVLSRSISELGIYPAVDPLDSKSRMMDPRILGEEHYNLAGSVQQMLQEYKSLQ 431

Query: 593 DIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKIL 414
           DIIAILGMDELSE DKLTV RARK+QRFLSQPF VAEVFTG  G+LV L++TI+ F +IL
Sbjct: 432 DIIAILGMDELSEADKLTVERARKVQRFLSQPFAVAEVFTGIEGRLVSLKDTIRSFKEIL 491

Query: 413 AGDYDHLPEVAFYMVGPIEEVVAKAETLAK 324
            G +D LPE AFYMVG I++ V KAE +A+
Sbjct: 492 EGKHDSLPESAFYMVGSIDDAVKKAEKIAQ 521



 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 26/29 (89%), Positives = 27/29 (93%)
 Frame = -2

Query: 849 KGSITSVQAIYVPADDLTDPAPATTFCSL 763
           KGSITSVQA+YVPADDLTDPAPATTF  L
Sbjct: 347 KGSITSVQAVYVPADDLTDPAPATTFAHL 375


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
 Frame = -3

Query: 746 LSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDIIAI 579
           + R +    IYP ++ L S SR+M   I       +H +V+  +  +    +    + ++
Sbjct: 357 VDRQLHNNAIYPPINVLPSLSRLMKSAIGEGMTRNDHGDVSNQLYAMYAIGRDAASMKSV 416

Query: 578 LGMDELSEEDKLTVARARKIQR-FLSQ 501
           +G + LS+ED+L +    K ++ F+SQ
Sbjct: 417 VGEEALSQEDRLALEFLGKFEKTFISQ 443



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 846 GSITSVQAIYVPADDLTDPAPATT 775
           GSIT +  + +P DD+T P P  T
Sbjct: 324 GSITQIPILTMPNDDITHPIPDLT 347


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = -3

Query: 647 YNVARG-VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 501
           +N  R  +++I+Q   S+ +II ++G   LSE DK+T+  A  I+  FL Q
Sbjct: 480 FNTLRDQIKQIIQQEDSMLEIIQLVGKSALSETDKVTLDIAGIIKNDFLQQ 530


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 830 CRLFMYQLMT*LILLQPPLFAHLDA 756
           CR  ++ L+T  +L+ PP F H +A
Sbjct: 127 CRTILFSLLTSFLLVPPPQFFHSEA 151


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 732 NGSRKYSGSIQVSKKWWLEQ 791
           NG+ KY+G IQ  K  W+EQ
Sbjct: 307 NGTPKYTGLIQCFKLVWMEQ 326


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 699  RIHSWVDTQFSNGSRKYSGSIQVSK 773
            R+ S  DT F N   KY  ++Q+SK
Sbjct: 1331 RVESSSDTVFENTDLKYDNNVQMSK 1355


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 395 LPEVAFYMVGPIEEVVAKAETLAKNA*TGQYCVIILKSCRVIY*K 261
           LP + +Y+ GP + V AK+  +  N     +C+ +++S R ++ K
Sbjct: 373 LPPIDYYLNGPYDNVEAKSALM--NI-YSSHCITLIESVRYMHLK 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,524,073
Number of Sequences: 5004
Number of extensions: 73942
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)