Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19f10r
(853 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 33 0.38
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 32 0.50
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 32 0.67
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 32 0.67
07_03_1201 + 24791588-24792619 30 2.7
11_06_0759 + 27008772-27009571,27010457-27010576,27011683-270119... 29 3.6
11_01_0151 - 1263237-1263406,1267405-1267646,1267681-1267781,126... 29 4.7
03_06_0672 + 35443883-35444051,35444151-35444482 29 4.7
03_05_0823 - 27970038-27970258,27970279-27970544,27970608-279706... 29 6.2
02_01_0150 + 1063732-1064214,1064290-1064355,1064721-1064803,106... 29 6.2
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340... 28 8.2
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 32.7 bits (71), Expect = 0.38
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Frame = -3
Query: 746 LSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHY--------NVARGVQKILQDYKSLQD 591
L + +A+ +P+V+ L S S+ HY ++ +++LQ L +
Sbjct: 441 LDKKLAQRKHFPSVNWLISYSKYSKIPTALEPHYEREDPDFIDIRTKAREVLQREDDLNE 500
Query: 590 IIAILGMDELSEEDKLTVARARKIQR-FLSQ 501
I+ ++G D L+E DK+T+ A+ ++ +L+Q
Sbjct: 501 IVQLVGKDALAESDKITLETAKLLREDYLAQ 531
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 32.3 bits (70), Expect = 0.50
Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -3
Query: 626 QKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 501
+++LQ L +I+ ++G D L+E DK+T+ A+ ++ +L+Q
Sbjct: 500 REVLQREDDLNEIVQLVGKDALAESDKITLETAKLLREDYLAQ 542
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 31.9 bits (69), Expect = 0.67
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Frame = -3
Query: 746 LSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDIIAI 579
+ R + IYP ++ L S SR+M I +H +V+ + K +Q + A+
Sbjct: 396 IDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAV 455
Query: 578 LGMDELSEEDKLTVARARKIQR-FLSQ 501
+G + LS ED L + K +R F++Q
Sbjct: 456 VGEEALSSEDLLYLEFLDKFERKFVTQ 482
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 846 GSITSVQAIYVPADDLTDPAPATT 775
GSIT + + +P DD+T P P T
Sbjct: 363 GSITQIPILTMPNDDITHPTPDLT 386
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 31.9 bits (69), Expect = 0.67
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Frame = -3
Query: 746 LSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDIIAI 579
+ R + IYP ++ L S SR+M I +H +V+ + K +Q + A+
Sbjct: 366 IDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAV 425
Query: 578 LGMDELSEEDKLTVARARKIQR-FLSQ 501
+G + LS ED L + K +R F++Q
Sbjct: 426 VGEEALSSEDLLYLEFLDKFERKFVTQ 452
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 849 KGSITSVQAIYVPADDLTDPAPATT 775
KGSIT + + +P DD+T P P T
Sbjct: 332 KGSITQIPILTMPNDDITHPTPDLT 356
>07_03_1201 + 24791588-24792619
Length = 343
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Frame = -3
Query: 602 SLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPL--EETIKG 429
S D + +L ++L D R + RF+ +PF AE G +V L E +K
Sbjct: 227 SRPDRVLLLRYEDLLR-DGAAGEHVRAMARFMGRPFSAAEEAAGAVASVVELCSFERMKA 285
Query: 428 FS---KILAGDYDHLPEVAFYMVG 366
+ AG Y +P AF+ G
Sbjct: 286 LEVNRRGTAGSYKSMPRDAFFRKG 309
>11_06_0759 +
27008772-27009571,27010457-27010576,27011683-27011957,
27012516-27013783
Length = 820
Score = 29.5 bits (63), Expect = 3.6
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = +3
Query: 423 GESFDGFLKWY*FTRMSSEHLSYLER------L*EEPLNFTCTCHCQLVFFR*LVHTQNS 584
G +FD + W F + L YLE + P TC V R LVH Q+S
Sbjct: 704 GFTFDCRVPWVTFKEEAMPSLQYLELKLYAGPAGKIPSGITCLPCLTKVILRYLVHYQSS 763
Query: 585 NNVLQGFVVLKNFLNSTCNIVVLSSNNIGVHD 680
+V ++ + N++VLS N G H+
Sbjct: 764 ASVQDTISKMRKESSEHPNMIVLSQN--GEHE 793
>11_01_0151 -
1263237-1263406,1267405-1267646,1267681-1267781,
1268010-1268780
Length = 427
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 466 ACPVNTSATWKGCERNL*ILRARATVNLSSSDNSSI 573
A P+ +S TWKG E L +++ R + + DN I
Sbjct: 42 AFPLVSSPTWKGIEHGLELVKQRIIWRVGNGDNIKI 77
>03_06_0672 + 35443883-35444051,35444151-35444482
Length = 166
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 641 VARGVQKILQDYKSLQDIIAILGMDELSEEDK 546
VA GVQ++++ KSL I A+ +E EE++
Sbjct: 84 VATGVQRLIKGIKSLSQIFAMYDDEEEDEEER 115
>03_05_0823 -
27970038-27970258,27970279-27970544,27970608-27970657,
27971272-27971538,27971633-27972001,27972373-27973278
Length = 692
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +1
Query: 52 VICTYTYLLN**TI*TYVKLVEFIFIKQKVIKSITKRKTTFIFTHLLMYIFS 207
V+C T+L+N T T+ K V + KV ++ T + H++ + S
Sbjct: 63 VLCGATHLINLWTFTTHTKTVAMVMTVAKVSTAVVSCATALMLVHIIPDLLS 114
>02_01_0150 +
1063732-1064214,1064290-1064355,1064721-1064803,
1065100-1065155,1065247-1066061
Length = 500
Score = 28.7 bits (61), Expect = 6.2
Identities = 21/74 (28%), Positives = 40/74 (54%)
Frame = -3
Query: 626 QKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPL 447
+K+L+ ++Q+ ++ ++ E + A + + R LS F+ ++ AG LVP+
Sbjct: 181 KKMLKHRYAMQEAKHLVCDKNVTVEQSIHTALSSQFVR-LSSYFK--KIHMSGAGNLVPM 237
Query: 446 EETIKGFSKILAGD 405
E +K SKI AG+
Sbjct: 238 EIALKVASKIAAGE 251
>02_01_0473 -
3403547-3404241,3404455-3404983,3405299-3405477,
3405868-3405952,3406136-3406482,3407061-3407159,
3408135-3408636
Length = 811
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 466 ACPVNTSATWKGCERNL*ILR 528
A P NTS TWKG E L +L+
Sbjct: 440 AFPSNTSPTWKGIEHGLELLK 460
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,758,439
Number of Sequences: 37544
Number of extensions: 447811
Number of successful extensions: 1044
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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