Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19f10r
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   259   2e-69
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    33   0.26 
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    31   0.79 
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    30   1.8  
U64598-1|AAK39215.2|  330|Caenorhabditis elegans Serpentine rece...    29   3.2  
Z50797-5|CAA90675.1|  342|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U80448-7|AAB37820.1|  260|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U23513-1|ABD94110.1|  294|Caenorhabditis elegans Hypothetical pr...    29   5.5  
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    28   7.3  
AF000263-17|AAG00013.1|  179|Caenorhabditis elegans Hypothetical...    28   9.7  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  259 bits (635), Expect = 2e-69
 Identities = 125/150 (83%), Positives = 135/150 (90%)
 Frame = -3

Query: 773 FAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQ 594
           FAHLDATTVLSR IAEL IYPAVDPLDSTSRIMDPN++G  HY++ARGVQKILQDYKSLQ
Sbjct: 385 FAHLDATTVLSRGIAELAIYPAVDPLDSTSRIMDPNVVGQNHYDIARGVQKILQDYKSLQ 444

Query: 593 DIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKIL 414
           DIIAILGMDELSEEDKLTV+RARKIQRFLSQPFQVAEVFTGH GK V LEETI+GF+ IL
Sbjct: 445 DIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHQGKFVSLEETIRGFTMIL 504

Query: 413 AGDYDHLPEVAFYMVGPIEEVVAKAETLAK 324
            G+ DHLPEVAFYM G I++V  KAE LAK
Sbjct: 505 KGELDHLPEVAFYMQGGIDDVFKKAEELAK 534



 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 27/29 (93%), Positives = 27/29 (93%)
 Frame = -2

Query: 849 KGSITSVQAIYVPADDLTDPAPATTFCSL 763
           KGSITSVQAIYVPADDLTDPAPATTF  L
Sbjct: 360 KGSITSVQAIYVPADDLTDPAPATTFAHL 388


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 20/76 (26%), Positives = 41/76 (53%)
 Frame = -3

Query: 626 QKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPL 447
           ++ILQ+ + L +I+ ++G   L+E DK+T+    ++ + +   F     +T +  +  P 
Sbjct: 469 KEILQEEEDLSEIVQLVGKASLAESDKVTL----EVAKIIKDDFLQQNGYTKY-DRFCPF 523

Query: 446 EETIKGFSKILAGDYD 399
            +T+ G  K + G YD
Sbjct: 524 YKTV-GMLKNMIGFYD 538


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
 Frame = -3

Query: 719 IYPAVDPLDSTSRIM----DPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEE 552
           IYP +D L S SR+M       +   +H +++  +       K +Q + A++G++ LS +
Sbjct: 380 IYPPIDVLPSLSRLMKSAVGEGMTREDHSDLSNQLYACYAMGKDVQAMKAVVGVEALSPD 439

Query: 551 DKLTVARARKIQR-FLSQ 501
           D L +    K ++ F++Q
Sbjct: 440 DLLYLEFLAKFEKNFIAQ 457


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
 Frame = -3

Query: 719 IYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEE 552
           IYP ++ L S SR+M   I       +H +V+  +       K +Q + A++G + LS +
Sbjct: 368 IYPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSSD 427

Query: 551 DKLTVARARKIQR-FLSQ 501
           D L +    K ++ F++Q
Sbjct: 428 DLLYLEFLTKFEKNFITQ 445



 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 846 GSITSVQAIYVPADDLTDPAPATT 775
           GSIT +  + +P DD+T P P  T
Sbjct: 326 GSITQIPILTMPNDDITHPIPDLT 349


>U64598-1|AAK39215.2|  330|Caenorhabditis elegans Serpentine
           receptor, class v protein6 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = -3

Query: 311 GQYCVIILKSCRVIY*KFDVSLVIIIINTNYTSASENIYINKCVKIKVVFLFVIDFITFC 132
           G  C++    C + Y      + +I+I  N+  +S  ++  K        LF+  F++FC
Sbjct: 184 GMCCLVTCAFCMICY-----IITMILIKKNWKKSSNTVF-KKTGATAERSLFISSFLSFC 237

Query: 131 FMNINST 111
            + +N T
Sbjct: 238 VLMLNLT 244


>Z50797-5|CAA90675.1|  342|Caenorhabditis elegans Hypothetical
           protein T22H6.4 protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 794 ILLQPPLFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMD 672
           +++  P+F  +D     ++  A LGIYPA+DP+ +   I D
Sbjct: 266 LIIVLPVFG-IDVGVAANKTAAFLGIYPALDPMIAIFLIKD 305


>U80448-7|AAB37820.1|  260|Caenorhabditis elegans Hypothetical
           protein F59A3.7 protein.
          Length = 260

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -3

Query: 251 SLVIIIINTNYTSASENIYINKCVKIKVVFLFVIDFITFCFMNINSTNL 105
           ++++I I  N   AS  + +  C++  +  LF + F++ CF+ I S  +
Sbjct: 28  NILLIYILWNMILASLFLVLKLCIESSISILFSLPFVSTCFIFIFSLRM 76


>U23513-1|ABD94110.1|  294|Caenorhabditis elegans Hypothetical
           protein D2021.4a protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = -3

Query: 686 SRIMDPNIIGAEHYN-VARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRF 510
           ++I D N+I + HYN V+ G  + L D K ++ +  +   D   E  K+ +A  +   +F
Sbjct: 56  NKIKDENVIFSMHYNFVSAGDPRKLIDIK-IEKVGNVYTADVYHENKKIGLAHIKTDSKF 114

Query: 509 LSQ-PF 495
           L + PF
Sbjct: 115 LRKIPF 120


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -1

Query: 739 EPLLNWVSTQLWILLTQHPVSWTPI-LLELSTTM-LHVEFRK 620
           + L N++  Q W++L  HP  +TP+   EL+  + L  EFRK
Sbjct: 20  QTLHNYIGEQ-WLMLFSHPADFTPVCTTELAELVKLAPEFRK 60


>AF000263-17|AAG00013.1|  179|Caenorhabditis elegans Hypothetical
           protein T08B2.3 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 188 KCVKIKVVFLFVIDFITFCFMNINSTNLTYV 96
           +C  +  V+L    FI FC +++NS  L Y+
Sbjct: 33  RCQVVMCVYLSFPKFINFCIVSLNSPALIYM 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,440,256
Number of Sequences: 27780
Number of extensions: 420747
Number of successful extensions: 1048
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)