Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19f10f
(736 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 217 7e-57
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 64 1e-10
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 64 1e-10
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 44 8e-05
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 44 1e-04
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 40 0.001
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 32 0.48
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 31 1.1
U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam ... 29 2.6
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 29 2.6
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 29 2.6
AL110484-8|CAB54399.1| 274|Caenorhabditis elegans Hypothetical ... 29 3.4
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 29 4.5
Z68003-2|CAA91976.2| 560|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z54342-1|CAA91143.1| 505|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z48638-10|CAA88566.1| 118|Caenorhabditis elegans Hypothetical p... 28 7.9
U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical p... 28 7.9
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 217 bits (530), Expect = 7e-57
Identities = 116/204 (56%), Positives = 132/204 (64%), Gaps = 5/204 (2%)
Frame = +3
Query: 138 CRVGRLATKTVVNNATEKASLVTGAAVNKRDYAAKASXXXXXXXXXXXXXXXXXX----- 302
C + + + NN K + TG A + A K S
Sbjct: 24 CALPAASIRLSSNNVESKKGIHTGVATQQAAAATKVSAKATAANASGRIVAVIGAVVDVQ 83
Query: 303 FEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRI 482
F++NLPPILN LEV RSPRL+LEV+QHLG+N VR IAMDGTEGLVRGQPV D+G PI+I
Sbjct: 84 FDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDPIKI 143
Query: 483 PVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLA 662
PVG ETLGRI+NVIGEPIDERGPI + AAIHAEAPEFV+MSV+QEILVTGIKVVDLLA
Sbjct: 144 PVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLA 203
Query: 663 PYAXXXXXXXXXXXXXXXTVLIME 734
PYA TVLIME
Sbjct: 204 PYAKGGKIGLFGGAGVGKTVLIME 227
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 64.1 bits (149), Expect = 1e-10
Identities = 30/97 (30%), Positives = 53/97 (54%)
Frame = +3
Query: 375 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 554
+A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GPI
Sbjct: 63 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122
Query: 555 PTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 665
+ + + +AP + +E +VTG+K VD L P
Sbjct: 123 ANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVP 159
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 64.1 bits (149), Expect = 1e-10
Identities = 30/97 (30%), Positives = 53/97 (54%)
Frame = +3
Query: 375 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 554
+A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GPI
Sbjct: 90 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149
Query: 555 PTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 665
+ + + +AP + +E +VTG+K VD L P
Sbjct: 150 ANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVP 186
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +3
Query: 387 LGENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTD 563
+ +N +GT G+ + + +G +R PV + LGRI N G+PID+ P+ +
Sbjct: 71 ISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAE 130
Query: 564 KTAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 659
I+ + +E++ TGI +D++
Sbjct: 131 DFLDINGQPINPWSRIYPEEMIQTGISAIDVM 162
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +3
Query: 519 VIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 665
V+G PID +GPI + + + +AP + +E +VTG+K VD L P
Sbjct: 103 VLGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVP 151
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 462 SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGI 641
+G R PV + LGRI N G+PID+ P+ + I+ + + +E++ TGI
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDYLDINGQPINPFNRIYPEEMIQTGI 168
Query: 642 KVVDLL 659
+D++
Sbjct: 169 SAIDVM 174
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 426 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 542
T G+ G PVL +G P+ + +G +G I + I P+ +
Sbjct: 59 TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = -1
Query: 646 TFIPVTRISCCTDMSTNSGASAWIAAVLSVGMGPRS-SIGSPITL-MMRPRV---SAPTG 482
TF PVT +S + +T + + + P + + +P T+ M P + P
Sbjct: 468 TFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTMTPSTGTTTVPVP 527
Query: 481 IRMGEPESSTGCPRTKPSVPS 419
G P + T P TKP+VPS
Sbjct: 528 TTTGSPTTQTTAPVTKPTVPS 548
>U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam
protein 3 protein.
Length = 487
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 420 DGTEGLVRGQPV-LDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPE 596
D +G + G+P+ +D G ++ P G E + ++ N GEP+DE A I + E
Sbjct: 152 DTVKGALLGEPITIDCG--VKGPSGKEPMIQMTNGNGEPLDEEIWTIAGNEATIDSLKKE 209
Query: 597 FVDMSV 614
+++V
Sbjct: 210 HAELTV 215
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = -1
Query: 607 MSTNSGASAWIAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPS 428
+ T G +A +A M RS P+T M P + P S+ PR
Sbjct: 9 LPTEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 68
Query: 427 VPSMAMVRTVFSP 389
P+ A +T P
Sbjct: 69 TPTAAPPKTCAPP 81
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = -1
Query: 607 MSTNSGASAWIAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPS 428
+ T G +A +A M RS P+T M P + P S+ PR
Sbjct: 138 LPTEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 197
Query: 427 VPSMAMVRTVFSP 389
P+ A +T P
Sbjct: 198 TPTAAPPKTCAPP 210
>AL110484-8|CAB54399.1| 274|Caenorhabditis elegans Hypothetical
protein Y38E10A.8 protein.
Length = 274
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 596 VCRHVCAAGDSRNWYKSRRSARSLCQRWKDWVVWRSWCGQ 715
+C +C ++W K R+ARS + W++ + W Q
Sbjct: 96 ICMELCEQNTLKDWIKGNRTARS-----RPWMLMKDWIKQ 130
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/84 (28%), Positives = 32/84 (38%)
Frame = +2
Query: 194 ITGDWSRCEQT*LCSQGFRQRAR*GSCRYWCRSGCSV*RQLAADPKCP*GAKSISPXXXX 373
I GDWS+C + C G+R+R+ SC S C R+ KC + P
Sbjct: 1494 IIGDWSKCSAS--CGGGWRRRS--VSC---TSSSCDETRKPKMFDKC--NEELCPPLTNN 1544
Query: 374 XXXXXXREHCTYHCHGRY*RLSPW 445
HC+ C G R W
Sbjct: 1545 SWQISPWTHCSVSCGGGVQRRKIW 1568
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/84 (28%), Positives = 32/84 (38%)
Frame = +2
Query: 194 ITGDWSRCEQT*LCSQGFRQRAR*GSCRYWCRSGCSV*RQLAADPKCP*GAKSISPXXXX 373
I GDWS+C + C G+R+R+ SC S C R+ KC + P
Sbjct: 1494 IIGDWSKCSAS--CGGGWRRRS--VSC---TSSSCDETRKPKMFDKC--NEELCPPLTNN 1544
Query: 374 XXXXXXREHCTYHCHGRY*RLSPW 445
HC+ C G R W
Sbjct: 1545 SWQISPWTHCSVSCGGGVQRRKIW 1568
>Z68003-2|CAA91976.2| 560|Caenorhabditis elegans Hypothetical
protein E02H4.2 protein.
Length = 560
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 98 LNFQKYYRNVSYCLQSRPFGYEDSSKQC 181
L QKYY + Y LQS+P +K C
Sbjct: 130 LPHQKYYNSEQYALQSQPCNQYQMNKLC 157
>Z54342-1|CAA91143.1| 505|Caenorhabditis elegans Hypothetical
protein C08H9.1 protein.
Length = 505
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -1
Query: 202 TSDAFSVALFTTVFVAKRPTLQTVGNISIIFLKI**KGSKVGSNWLRKSQILYVTIRPVP 23
TS FSV LF +F++ + GN I LK+ N +K + R +P
Sbjct: 4 TSLVFSVLLFDLIFISNCDYIHLPGNSDIPDLKLQSGYLNANENGTQKMFYFLLEARDIP 63
Query: 22 MG 17
+G
Sbjct: 64 VG 65
>Z48638-10|CAA88566.1| 118|Caenorhabditis elegans Hypothetical
protein ZK892.2 protein.
Length = 118
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 119 DNIFENLVERQQSRIELVTKITNSLRNDPSSADGRMR 9
D IFE + ER + E+V K+ S R + ADG+ +
Sbjct: 6 DVIFEEIKERIATDKEMVKKVGTSFRMTIAGADGKTK 42
>U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical
protein R05F9.12 protein.
Length = 955
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = -3
Query: 239 GCIVTFVHSGSSHQ*CFFSSIVYYCLRSQTAYSADSRKHFDNIFENLVERQQSRIELVTK 60
GCI +G + C+F V Y L SQ + + RK+ N + I+L TK
Sbjct: 39 GCIWKEDDTGKNAPWCYFKDGVGYNLDSQQGSTYNLRKNGGP--SNPWGADSTEIKLTTK 96
Query: 59 ITNSLRNDPSSADGR 15
S+ N DGR
Sbjct: 97 SIGSVLNVKIGIDGR 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,672,623
Number of Sequences: 27780
Number of extensions: 395697
Number of successful extensions: 1117
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -