Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19f08f
         (761 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    26   0.38 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.87 
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    24   1.5  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   2.7  
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    23   3.5  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    23   3.5  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    23   3.5  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    22   4.6  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    22   4.6  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    22   4.6  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    22   4.6  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    22   4.6  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    22   4.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.1  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   6.1  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   6.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   8.1  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
 Frame = -3

Query: 273 TDSNSPDANCVVDDTVCCGQNGSVVENRASAI----LGPSTPVPGHKQGSYCWVPIYR 112
           +D +  D N  VDD    G+      +  + +    L PS P  GH Q  + W  + R
Sbjct: 33  SDRDDDDENITVDDDDTDGRESLSPSSAHTVLIPQPLHPSVPRLGHPQWPFAWGSLXR 90


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 647 PVHESRPPTSSQPAQSMLFVMVLPPY 570
           P H   PP+  QP Q M +    PPY
Sbjct: 62  PHHYGGPPSGGQPPQGMPYPR-FPPY 86


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -2

Query: 748 RERRRQGSGHDRSYFRKSSHQRPRCCDKADLQSHRCMS--RDRQRPASQRKA 599
           R+R+   S  + S+  K   +R       D+Q  R M+  R+RQR  S  +A
Sbjct: 64  RKRKSISSDEENSFQGKHKSRRKAPQSFEDIQHQRVMANVRERQRTQSLNEA 115


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 484 PSQPPKPPGCRPGCSLIQEC 425
           PSQ P+P   RP   +++ C
Sbjct: 218 PSQSPEPESVRPLSLVVRRC 237


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 84  SEDRWR*YNDDKSVPNNSCPAYDQELEYLV 173
           SE  W+   +D +     C   D+E+ Y+V
Sbjct: 262 SESAWKNLREDYNRLCRLCKRVDEEISYIV 291


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 84  SEDRWR*YNDDKSVPNNSCPAYDQELEYLV 173
           SE  W+   +D +     C   D+E+ Y+V
Sbjct: 262 SESAWKNLREDYNRLCRLCKRVDEEISYIV 291


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 84  SEDRWR*YNDDKSVPNNSCPAYDQELEYLV 173
           SE  W+   +D +     C   D+E+ Y+V
Sbjct: 262 SESAWKNLREDYNRLCRLCKRVDEEISYIV 291


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 84  SEDRWR*YNDDKSVPNNSCPAYDQELEYLV 173
           SE  W   NDD +   + C   D++L Y++
Sbjct: 260 SEKSWIALNDDYNRLCHLCFLLDEKLSYII 289


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 586 WYYHHTETCRRFG 548
           W+ H TE+ R FG
Sbjct: 429 WFEHETESGRNFG 441


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 586 WYYHHTETCRRFG 548
           W+ H TE+ R FG
Sbjct: 429 WFEHETESGRNFG 441


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 586 WYYHHTETCRRFG 548
           W+ H TE+ R FG
Sbjct: 429 WFEHETESGRNFG 441


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 586 WYYHHTETCRRFG 548
           W+ H TE+ R FG
Sbjct: 429 WFEHETESGRNFG 441


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 586 WYYHHTETCRRFG 548
           W+ H TE+ R FG
Sbjct: 429 WFEHETESGRNFG 441


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 259 RVRVGSTWGNSGGVVHHVNRHIIHPNYG 342
           R ++G     +G VV H+N   IH N G
Sbjct: 459 RNQIGQYVTVNGDVVSHLNITAIHTNDG 486


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 145 LMTRNWSTWSQNCGSSIL-NNRSVLTAAHCIIDDAVGV 255
           + TR    + Q  G+ I+ +N +++T + C+I  AVG+
Sbjct: 153 MWTRFQLKYYQVTGTPIIFHNLTLITYSLCVISWAVGI 190


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 145 LMTRNWSTWSQNCGSSIL-NNRSVLTAAHCIIDDAVGV 255
           + TR    + Q  G+ I+ +N +++T + C+I  AVG+
Sbjct: 153 MWTRFQLKYYQVTGTPIIFHNLTLITYSLCVISWAVGI 190


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 625 GGRDSCTGDSGG 660
           GGRD   GD GG
Sbjct: 97  GGRDGDRGDGGG 108


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 197 STTDPF*PQHTVSSTTQLAS 256
           S+T P+ P H +S +  L S
Sbjct: 68  SSTSPYPPNHPLSGSKHLCS 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,614
Number of Sequences: 336
Number of extensions: 4374
Number of successful extensions: 22
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)