Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19f05r
(872 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 42 2e-04
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 34 0.030
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 30 0.37
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 30 0.49
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.65
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.5
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 28 2.0
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 27 2.6
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||... 26 6.1
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|... 26 6.1
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 26 6.1
SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces p... 26 8.1
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 26 8.1
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 26 8.1
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 26 8.1
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 8.1
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 41.5 bits (93), Expect = 2e-04
Identities = 61/235 (25%), Positives = 92/235 (39%), Gaps = 22/235 (9%)
Frame = -2
Query: 835 PEAAPIISTGFSPDRTKTIARCL*TATSTP*G----IHTTAPTEVPLSSSTDGTTMATPR 668
P + T SP T T C T+TS P G + T VP +S++ + P
Sbjct: 209 PTSTSSTDTNSSPLPT-TSTSCT-TSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPT 266
Query: 667 *TLSSDPPSLPFKT*MSSLLTGTDLL--------IQTTILPPLASRMSVAP--SATFWFG 518
T S+D S P T +S T T + + T+ P S S P ++T G
Sbjct: 267 STSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTG 326
Query: 517 -SSTMLEAIGTKCIXXXXXXXXXXXVMPDAKPVVAPHALQVWT--PPDHSGEETLTHSTA 347
SS+ L + T C P P V P + + PP S T T S+
Sbjct: 327 TSSSPLPSTSTSCTTSTSIPPTGNSTTP-VTPTVPPTSTSSTSTPPPPASTSSTGTSSSP 385
Query: 346 MLVITSNASTRTGVLLVFS-----TPAVMPTSTRMAAGTPNPDAGSTPAHTVAPL 197
+L +++ +T T + + TP V PTS+ T N ++ +T P+
Sbjct: 386 LLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPV 440
Score = 35.5 bits (78), Expect = 0.010
Identities = 48/195 (24%), Positives = 74/195 (37%), Gaps = 19/195 (9%)
Frame = -2
Query: 724 PTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGTDL------LIQTTILPPL 563
PT P S+S+ + P T S+D S P T +S T T + + T I P +
Sbjct: 193 PTVPPTSTSSTSIPIP-PTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTV 251
Query: 562 ------ASRMSVAPSATFWFGS-STMLEAIGTKCIXXXXXXXXXXXVMPDAKPVVAPHAL 404
++ + + P++T + S+ L T C P V
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTS 311
Query: 403 QVWTPPDHSGEETLTHSTAMLVITSNASTR------TGVLLVFSTPAVMPTSTRMAAGTP 242
TPP + + S++ L TS + T TG TP V PTST + P
Sbjct: 312 STSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPP 371
Query: 241 NPDAGSTPAHTVAPL 197
P + S+ + +PL
Sbjct: 372 PPASTSSTGTSSSPL 386
Score = 28.7 bits (61), Expect = 1.1
Identities = 49/213 (23%), Positives = 82/213 (38%)
Frame = -2
Query: 835 PEAAPIISTGFSPDRTKTIARCL*TATSTP*GIHTTAPTEVPLSSSTDGTTMATPR*TLS 656
P A STG S + + T+TS P ++T P + ++ T + T T S
Sbjct: 371 PPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTS 430
Query: 655 SDPPSLPFKT*MSSLLTGTDLLIQTTILPPLASRMSVAPSATFWFGSSTMLEAIGTKCIX 476
+ P T ++S T +T +P ++ ++ P T +ST + T
Sbjct: 431 TSVPYT--STPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTS 488
Query: 475 XXXXXXXXXXVMPDAKPVVAPHALQVWTPPDHSGEETLTHSTAMLVITSNASTRTGVLLV 296
P+ T +++ + T T+ V T+N +T T VL
Sbjct: 489 TPLTTTNC------TTSTSVPYTSTPVTSSNYTISSS-TPVTSTPVTTTNCTTSTSVLYT 541
Query: 295 FSTPAVMPTSTRMAAGTPNPDAGSTPAHTVAPL 197
STP TST +A T N ++ +T P+
Sbjct: 542 -STPV---TSTPLA--TTNCTTSTSVPYTSTPV 568
Score = 25.8 bits (54), Expect = 8.1
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -2
Query: 739 IHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSL-LTGTDLLIQT-TILPP 566
+ T +P E+ +S T T+ +TP T S+ S T SS L T T T +PP
Sbjct: 64 LSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPP 123
Query: 565 LASRMSVAPSAT 530
S++ T
Sbjct: 124 TGGSSSLSTPIT 135
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 33.9 bits (74), Expect = 0.030
Identities = 65/253 (25%), Positives = 106/253 (41%), Gaps = 11/253 (4%)
Frame = -2
Query: 757 TSTP*GIHTTAPTEVPLSSST--DGTTMATPR*TLSSDPPSLPFKT*MSSL-LTGTDLLI 587
TSTP T T P++SST + +T T L++ P SS +T + +L
Sbjct: 1184 TSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSSTPITSSSILN 1243
Query: 586 QTTILPPLASRMSVAPSATFWFGSSTMLEA---IGTKCIXXXXXXXXXXXVMPDAKPVVA 416
+T P+ S SV S+T SST++ + I + V+ + P+ +
Sbjct: 1244 SST---PITS-SSVLNSST-PITSSTVVNSSTPITSSTALNTSIPITSSSVLNSSTPITS 1298
Query: 415 PHALQVWTPPDHSGE-ETLTHSTAMLVITSNASTRTGVLLVFSTPAVMPTSTRMAAGTPN 239
AL T S + T T+ V+ ++ + +L STP + +ST + + T
Sbjct: 1299 STALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTP--ITSSTVVNSST-- 1354
Query: 238 PDAGSTPAHTVAPLN*WHPVFVLTTWLEDAVVTSGKPSFPTAMVELC--IWATETLGSAD 65
P ST +T P+ V T VV S P + ++ I ++ L S+
Sbjct: 1355 PITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSST 1414
Query: 64 P--ASTV*ELATP 32
P +STV +TP
Sbjct: 1415 PITSSTVVNTSTP 1427
Score = 33.1 bits (72), Expect = 0.053
Identities = 68/299 (22%), Positives = 115/299 (38%), Gaps = 19/299 (6%)
Frame = -2
Query: 856 STMNYWAPEAAPIISTGFSPDRTKTIARCL*TATSTP*GIHTTAPTEVPLSSST--DGTT 683
S +N P + + +P + T+ TSTP T T P++SST + +T
Sbjct: 2176 SVLNSSTPITSSTVVNSSTPITSSTVVN-----TSTPITSSTVVNTSTPITSSTVVNSST 2230
Query: 682 MATPR*TLSSDPPSLPFKT*MSSLLTGTDLLIQTTILPPLASRMSVAPSATFWFGSSTML 503
T L+S P SS + ++ T+ P+ S V S SST++
Sbjct: 2231 PITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTS--TPITSSTVVNSSTP--ITSSTVV 2286
Query: 502 EA---IGTKCIXXXXXXXXXXXVMPDAKPVVAPHALQVWTPPDHSG-EETLTHSTAMLVI 335
I + + + + P+ + L TP S T T T+ V+
Sbjct: 2287 NTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVL 2346
Query: 334 TSNASTRTGVLLVFSTP----AVMPTSTRMAA----GTPNPDAGSTPAHTVAPLN*WHPV 179
S+ + ++ STP + TST + + + P ST +T P+ V
Sbjct: 2347 NSSTPITSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPIT-SSSV 2405
Query: 178 FVLTTWLEDAVVTSGKPSFPTAMV---ELCIWATETLGSADP--ASTV*ELATPGLSKS 17
+T + + V + S ++ V I ++ L S+ P +STV +TP S S
Sbjct: 2406 LNSSTPITSSTVVNTSTSITSSSVLNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSS 2464
Score = 32.3 bits (70), Expect = 0.093
Identities = 64/252 (25%), Positives = 100/252 (39%), Gaps = 10/252 (3%)
Frame = -2
Query: 757 TSTP*GIHTTAPTEVPLSSST--DGTTMATPR*TLSSDPPSLPFKT*MSSLLTGTDLLIQ 584
TSTP T T P++SST + +T T L++ P +T + +L
Sbjct: 1496 TSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTP-----------ITSSSVLNS 1544
Query: 583 TTILPPLASRMSVAPSATFWFGSSTMLEA---IGTKCIXXXXXXXXXXXVMPDAKPVVAP 413
+T P+ S SV S+T SST++ I + + + + P+ +
Sbjct: 1545 ST---PITS-SSVLNSST-PITSSTVVNTSTPITSSSVVNSSTPITSSTALNTSTPITSS 1599
Query: 412 HALQVWTP-PDHSGEETLTHSTAMLVITSNASTRTGVLLVFSTPAVMPTSTRMAAGTPNP 236
L TP + T T T+ V+ S+ + +L STP T A T P
Sbjct: 1600 SVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSST----ALNTSPP 1655
Query: 235 DAGSTPAHTVAPLN*WHPVFVLTTWLEDAVVTSGKP-SFPTAM-VELCIWATETLGSADP 62
ST ++ P+ V T VV S P + TA+ I ++ L S+ P
Sbjct: 1656 ITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTP 1715
Query: 61 --ASTV*ELATP 32
+STV +TP
Sbjct: 1716 ITSSTVVNTSTP 1727
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 30.3 bits (65), Expect = 0.37
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Frame = -2
Query: 361 THSTAMLVITSNASTRTGVLLVFSTPAVMPTSTRMAAGTPNPDAGSTPAHTVAPLN*WHP 182
T ST + S+ S +T L+ S+P + + T + TP H++ P N
Sbjct: 539 TPSTTIPTSNSSVSLQTSSSLIISSPIISSSLTATSTSTP------ALTHSITPSN---- 588
Query: 181 VFVLTTWLEDAVVTSGKPSFPTAMVELCIWATETLGSADPASTV*ELATPGLS--KSNE 11
T +++ S + ++++ +C T + S AS + L + +S KS+E
Sbjct: 589 -----TSYTSSLIPSSSTDYSSSLITVCSNVTSEISSTSLASLISTLTSQQISSNKSSE 642
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 29.9 bits (64), Expect = 0.49
Identities = 51/229 (22%), Positives = 79/229 (34%), Gaps = 4/229 (1%)
Frame = -2
Query: 838 APEAAPIISTGFSPDRTKTIARCL*TATSTP*GIHTTAPTEVPLSSSTDGTTMATPR*TL 659
A P++ T P T + T T TP TT V + TM TP
Sbjct: 89 AAMTTPMVETTTIPTVETTTTPMVETTTITPMVETTTITPMVEAMITLMEETMTTPMEET 148
Query: 658 SSDPPSLPFKT*MSSLLTGTDLLIQTTILPPLASRMSVAPSATFWFGSSTMLEAIGTKCI 479
++ P T M T T ++ +TT +P + + + A + + A+ T
Sbjct: 149 TTILPMAAMTTPMEETTTTTPMV-ETTTIPTVETMTTPMVEAM----TILPMAAMTTPME 203
Query: 478 XXXXXXXXXXXVMPDAKPVVAPHALQVWTPPDHSGE---ETLTHSTAM-LVITSNASTRT 311
P + ++ P + TP + G T+ +T M +IT T T
Sbjct: 204 ETTTTPMEETTTTPMVETMITPMVEAMTTPTEVVGRSMVSTIRTTTPMEAMITPTVETTT 263
Query: 310 GVLLVFSTPAVMPTSTRMAAGTPNPDAGSTPAHTVAPLN*WHPVFVLTT 164
+TP T+T M P +T V + P V TT
Sbjct: 264 LPTAAMTTPVEETTTTPMVETMITPTVVTTTTPMVETM--ITPTVVTTT 310
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.5 bits (63), Expect = 0.65
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = -2
Query: 763 TATSTP*GIHTTAPTEVPLSSSTDGTTMATPR*TLS---SDPPSLPFKT*MSSLLTGTDL 593
T TSTP T APT +SS TT P + S S+ P T SS T
Sbjct: 603 TPTSTPLSNSTVAPTST-FTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSG 661
Query: 592 LIQTTILPPLASRMSVAPSATF 527
L ++ P +S S+ P++TF
Sbjct: 662 LPTSSASTP-SSNSSIVPTSTF 682
Score = 28.7 bits (61), Expect = 1.1
Identities = 49/223 (21%), Positives = 87/223 (39%), Gaps = 4/223 (1%)
Frame = -2
Query: 706 SSSTDGTTMATP--R*TLSSDPPSLPFKT*MSSLLTGTDLLIQTTILPPLASRMSVAPSA 533
SSST+ TT ATP T SS + + SS L + L T+ +S S A S
Sbjct: 161 SSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASN 220
Query: 532 TFWFGSSTMLEAIGTKCIXXXXXXXXXXXVMPDAKPVVAPHALQVWTPPDHSGEETLTHS 353
+ SS++ + + + P+ + ++ T + ++
Sbjct: 221 S--ATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNT 278
Query: 352 TAMLVITSNASTRTGVLLVFSTPAVMPTSTRMAA--GTPNPDAGSTPAHTVAPLN*WHPV 179
+++L S+ + T + ST A +ST + + T A STP +V+ N
Sbjct: 279 SSLL--PSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTAT 336
Query: 178 FVLTTWLEDAVVTSGKPSFPTAMVELCIWATETLGSADPASTV 50
+T L T+ + T + + T T S+ P ++V
Sbjct: 337 STSSTPLSSVNSTTATSASSTPLTSVNS-TTATSASSTPLTSV 378
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.1
Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Frame = +1
Query: 370 PPHCGPA-GSKPV----TRA-GRPPAWRPALPTT*APKLKPI----RCTW--FQLPPALL 513
PP P+ G +P +RA PPA PA+P AP L P+ R + PP+L
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424
Query: 514 MSQTKKLPRARPTS---GTPAAAVL 579
S LP + P S G PAA L
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPL 449
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.5
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Frame = -2
Query: 427 PVVAPHALQVWTPPDHSGEETLTHSTAMLVITSNASTRTGVLLVFSTPAVMPTSTRMAAG 248
PV AP A Q+ G++ S+ + ++++ ST V+ P PT A
Sbjct: 1270 PVAAPTAQQI-----QPGKQASAVSSNVPAVSASISTPPAVVPTVQHP--QPTKQIPTAA 1322
Query: 247 TPNPDAGSTPAHTV-----APLN*WHPVFVLTTWLEDAVVTSGKPSFP 119
+P ST +T APL L + AV TS KP P
Sbjct: 1323 VKDPSTTSTSFNTAPIPQQAPLENQFSKMSLEPPVRPAVPTSPKPQIP 1370
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 113 NGGTLHMGNGNFGK 72
NGG +H G GNFGK
Sbjct: 706 NGGLIHQGVGNFGK 719
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -2
Query: 748 P*GIHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGT 599
P + TT PT VP SSST + TP+ + P L +T ++ LT +
Sbjct: 401 PSSLSTTDPTLVPQSSSTPKSAQKTPQKLPAFLPNRLTAETVDTNKLTAS 450
>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 356
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 738 IPHGVDVAVHKHLAIVLVLSGEKPVLIIGAASGAQ*FIVDGFMQV 872
I HG D + + L +S KP++++GA + DG M +
Sbjct: 122 ITHGTDSLEETAMFLDLTISTAKPIVVVGAMRPSTAIGADGPMNL 166
>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 738 IPHGVDVAVHKHLAIVLVLSGEKPVLIIGAASGAQ*FIVDGFMQV 872
I HG D + + L +S KP++++GA + DG M +
Sbjct: 122 ITHGTDSLEETAMFLDLTISTAKPIVVVGAMRPSTAIGADGPMNL 166
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -2
Query: 751 TP*GIHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGTDLLIQ 584
TP +++ P E P S S TM P S+PF T + L G ++ Q
Sbjct: 401 TPSFFNSSQPIETPSSYSHLSDTMLVPANMAGIPSVSIPFGTLNNGLPMGIQIMAQ 456
>SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 191
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 334 TSNASTRTGVLLVFST-PAVMPTSTRMAA 251
+S+ASTR GV FST P+V P + AA
Sbjct: 55 SSSASTRKGVWNFFSTHPSVHPANDEHAA 83
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 51 TVEAGSALPKVSVAHMQSSTIAVGKLGFPDVTTASSNQVVST 176
T E G+ LPK HM++ T +V K+ D T + + V+T
Sbjct: 611 TSEKGNILPKTVETHMKALTTSVDKV--LDQTAEALEEFVNT 650
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 382 HSGEETLTHSTAMLVITSNASTRTGVLLVFSTPA 281
HSG+ T ++A+L + N + + V+L + TPA
Sbjct: 214 HSGKGWETFTSAVLQVALNRNRKGLVILAWGTPA 247
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 8.1
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 198 SGA-TV*AGVDPASGLGVPAAIRVEVGITAGVENTKSTPVRVDAFDVMTSIAV 353
SGA T+ AG P GLG EVGI+A N K +A + S AV
Sbjct: 428 SGARTLPAGCGPCIGLGTGLLKDGEVGISATNRNFKGRMGSREALAYLASPAV 480
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 8.1
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Frame = -2
Query: 829 AAPIISTGFSPDRTKTIARCL*TATST-----P*GIHTTAPTEVPLSSSTDGTTMATPR* 665
+A + +T FS T+T + + T P H + T VP ++S + TT P
Sbjct: 41 SANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTT 100
Query: 664 TLSSDPPSLPFKT*MSSLLTGTDLLIQTTILPPL--ASRMSVAPSAT 530
+L++ + P T ++S TT++PP + +V P T
Sbjct: 101 SLNTTTTTAPPTTHVNST---------TTVVPPTTHVNTTTVVPPTT 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,948,381
Number of Sequences: 5004
Number of extensions: 88732
Number of successful extensions: 307
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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