Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19f05f
         (749 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    26   0.37 
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   4.6  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   4.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.6  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   8.0  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   8.0  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   8.0  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -1

Query: 668 PPHCGPA-GSKPVTRAGRPPAWRPALPTT*APKLKPIRCTWFQLPPALLMS 519
           PP    A GSKPV    +P  W P   T+   +   +  T  + PPA  +S
Sbjct: 415 PPSTPSADGSKPVQTTPKPGQWVPEKSTSTTQRTTTVSTT--EAPPAPAVS 463


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 94  NSHYVEGESRYIWMPDGEGVPQLVDLHEPIDYELLGSRSGA 216
           +S  + GE+ YI   DG+   Q   LH  +DY       GA
Sbjct: 146 HSKEIRGENTYILALDGDIDFQPEALHLLVDYMKKNKTLGA 186


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 94  NSHYVEGESRYIWMPDGEGVPQLVDLHEPIDYELLGSRSGA 216
           +S  + GE+ YI   DG+   Q   LH  +DY       GA
Sbjct: 460 HSKEIRGENTYILALDGDIDFQPEALHLLVDYMKKNKTLGA 500


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 94  NSHYVEGESRYIWMPDGEGVPQLVDLHEPIDYELLGSRSGA 216
           +S  + GE+ YI   DG+   Q   LH  +DY       GA
Sbjct: 693 HSKEIRGENTYILALDGDIDFQPEALHLLVDYMKKNKTLGA 733


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 94  NSHYVEGESRYIWMPDGEGVPQLVDLHEPIDYELLGSRSGA 216
           +S  + GE+ YI   DG+   Q   LH  +DY       GA
Sbjct: 693 HSKEIRGENTYILALDGDIDFQPEALHLLVDYMKKNKTLGA 733


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 699 TSIAVECVRVSSPLWSGGVQ 640
           + IA EC R  +P   GGVQ
Sbjct: 38  SDIADECERFLAPKGFGGVQ 57


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 699 TSIAVECVRVSSPLWSGGVQ 640
           + IA EC R  +P   GGVQ
Sbjct: 39  SDIADECERFLAPKGFGGVQ 58


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 689 RLSALEFPPHCGPAGSKPVTRAGRPP 612
           +L  LE PP   P  +K   R  RPP
Sbjct: 243 QLKELENPPTPKPRPTKVSRRKPRPP 268


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,750
Number of Sequences: 336
Number of extensions: 4419
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)