Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19f02f
         (534 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1VMZ9 Cluster: FtsK/SpoIIIE family protein; n=1; Psych...    33   3.1  
UniRef50_Q9SY83 Cluster: F14N23.29; n=4; Magnoliophyta|Rep: F14N...    33   3.1  
UniRef50_A6N8I9 Cluster: DNA-directed RNA polymerase; n=2; Fusar...    33   3.1  
UniRef50_Q0BU69 Cluster: Precorrin-2 dehydrogenase; n=1; Granuli...    33   4.1  
UniRef50_Q08Y71 Cluster: Putative uncharacterized protein; n=1; ...    33   4.1  
UniRef50_Q38V07 Cluster: Adenine deaminase 2; n=1; Lactobacillus...    33   4.1  
UniRef50_Q4RV69 Cluster: Chromosome 15 SCAF14992, whole genome s...    33   5.4  
UniRef50_Q582B3 Cluster: Putative uncharacterized protein; n=1; ...    32   9.5  

>UniRef50_Q1VMZ9 Cluster: FtsK/SpoIIIE family protein; n=1;
           Psychroflexus torquis ATCC 700755|Rep: FtsK/SpoIIIE
           family protein - Psychroflexus torquis ATCC 700755
          Length = 461

 Score = 33.5 bits (73), Expect = 3.1
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
 Frame = -2

Query: 395 TGESFESHVPSFFDWGEWSPLFSVSEIFTKRSLNFFSTLSSEMDLSTSSIVVPVGRTCLP 216
           TG +  S +     WG WS    ++ IF    L F   + SE  +    I  P+    + 
Sbjct: 7   TGAAIASPLILVIGWGSWS----LTPIFVIWGLRFLFHIGSERAIGRL-IFAPIA-IAVA 60

Query: 215 VVYGVSL----AY*RSM*SLRIPSKTFLGVALTVLSLIASDNSLTVTVGTDMILFVIVM 51
            VY  S+     +  S     +   T +G  LT++   ASD  L +TVG+  +  ++++
Sbjct: 61  SVYAASIIPTSVWAHSFGMGGLFGDTVVGSLLTLIPFSASDGILAITVGSLFLTIILII 119


>UniRef50_Q9SY83 Cluster: F14N23.29; n=4; Magnoliophyta|Rep:
           F14N23.29 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 1096

 Score = 33.5 bits (73), Expect = 3.1
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -2

Query: 398 KTGESFESHVPSFFDWGEWS-PLFSVSEIFTKRSLNFFSTLSSEMDLSTSSIVVPVGRTC 222
           +TG +F     +F  +G+ S P F  + IF K S  F +  SS   L+TSS   P G+T 
Sbjct: 604 QTGSAFGQTGSAFGQFGQSSAPAFGQNSIFNKPSTGFGNMFSSSSTLTTSS-SSPFGQTM 662

Query: 221 LPVVYGV 201
           +   + +
Sbjct: 663 VIFTFAI 669


>UniRef50_A6N8I9 Cluster: DNA-directed RNA polymerase; n=2; Fusarium
           proliferatum|Rep: DNA-directed RNA polymerase -
           Gibberella intermedia (Bulb rot disease fungus)
           (Fusariumproliferatum)
          Length = 1062

 Score = 33.5 bits (73), Expect = 3.1
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 31  KFEFYADITITNRIMSVPTVTVRELSDAINDNTVNATPKKVLEGILNDYM-DLQYAKETP 207
           K  FY+  T TN   ++ T+    +   +N+N  N   +K LE +L++Y  D  + K+  
Sbjct: 173 KVRFYSTSTKTNDRSTLDTILFENVRSLLNNNPNNEDTQKQLETMLHNYFSDYFFNKDKI 232

Query: 208 YTTG 219
           Y  G
Sbjct: 233 YIQG 236


>UniRef50_Q0BU69 Cluster: Precorrin-2 dehydrogenase; n=1;
           Granulibacter bethesdensis CGDNIH1|Rep: Precorrin-2
           dehydrogenase - Granulobacter bethesdensis (strain ATCC
           BAA-1260 / CGDNIH1)
          Length = 437

 Score = 33.1 bits (72), Expect = 4.1
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -1

Query: 285 DAVVRDGLVYVINSRAGGKDLLACGVRRLLGVLKVHVVVED 163
           D + R G+VY++ +  G  DLL    +RLLG  +  V+V D
Sbjct: 190 DTISRKGIVYLVGAGPGAPDLLTLRAQRLLG--EADVIVHD 228


>UniRef50_Q08Y71 Cluster: Putative uncharacterized protein; n=1;
           Stigmatella aurantiaca DW4/3-1|Rep: Putative
           uncharacterized protein - Stigmatella aurantiaca DW4/3-1
          Length = 574

 Score = 33.1 bits (72), Expect = 4.1
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 156 GRYPQRLHGPSVRQGDAVHHRQ 221
           G +PQR HG  V +GDA HH Q
Sbjct: 329 GNHPQRHHGREVERGDARHHTQ 350


>UniRef50_Q38V07 Cluster: Adenine deaminase 2; n=1; Lactobacillus
           sakei subsp. sakei 23K|Rep: Adenine deaminase 2 -
           Lactobacillus sakei subsp. sakei (strain 23K)
          Length = 580

 Score = 33.1 bits (72), Expect = 4.1
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 121 DNTVNATPKKVLEGILNDYMDLQYAKETPYTTGKQVLPTGTT 246
           DN +NA  + V+ G+++ ++ ++ A  +P   G  V P GTT
Sbjct: 58  DNVINAHGQYVVPGLIDPHIHIESANVSPAVFGSLVTPHGTT 99


>UniRef50_Q4RV69 Cluster: Chromosome 15 SCAF14992, whole genome
            shotgun sequence; n=4; Tetraodontidae|Rep: Chromosome 15
            SCAF14992, whole genome shotgun sequence - Tetraodon
            nigroviridis (Green puffer)
          Length = 2470

 Score = 32.7 bits (71), Expect = 5.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 238  RWEGPACLWCTASPWRTEGPCSR 170
            RW+GPAC W +   W     CSR
Sbjct: 2375 RWQGPACWWHSPEAWCCRRSCSR 2397


>UniRef50_Q582B3 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 410

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -2

Query: 410 LTKTKTGESFESHV--PSFFDWGEWSPLFSVSEIFTKRSLNFFSTLSSEMDLSTSSIVVP 237
           L  T T +  ++H+  P  F  G W P  S +  FTKR++N ++  S +++  T  +  P
Sbjct: 214 LLATCTFKHRDAHLRHPLAFPVGRWDPRSSTAPRFTKRNVNMYT--SKDLETKTQKLAQP 271


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 463,464,498
Number of Sequences: 1657284
Number of extensions: 8191297
Number of successful extensions: 25687
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25678
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 33739557507
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)