Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19f02f
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U97190-1|AAB52366.2|  495|Caenorhabditis elegans Cop-9 signaloso...    30   1.2  
M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF040643-13|AAB94958.1|  178|Caenorhabditis elegans Hypothetical...    28   4.8  
Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical ...    27   8.5  

>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 191 TPRRRRTPQASRSFPPA 241
           +PRRRR+P AS+S PPA
Sbjct: 301 SPRRRRSPSASKSPPPA 317


>U97190-1|AAB52366.2|  495|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 2 protein.
          Length = 495

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 309 KEIVELLLDAVVRDGLVYVINSRAG 235
           KE++ LL+DA++ DGL   IN  +G
Sbjct: 383 KEVIHLLVDAILDDGLEAKINEESG 407


>M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical
           protein B0303.11 protein.
          Length = 903

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 318 NFHKEIVELLLDAVVRDGLVYVINSRAGGKDLLACG 211
           +FH +I+ L      R GLV   +S   GK LL CG
Sbjct: 475 HFHPQILLLSGSPAARPGLVDFAHSITRGKSLLICG 510


>AF040643-13|AAB94958.1|  178|Caenorhabditis elegans Hypothetical
           protein F14D2.2 protein.
          Length = 178

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 97  RELSDAINDNTVNATPKKVLEGILNDYMDL 186
           RE  D   D T +A+ KKV+  +L DY D+
Sbjct: 36  REKKDYYRDATKDASVKKVVLSLLKDYPDM 65


>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +2

Query: 170 TTTWTFSTPRRRRTP-QASRSFPPA 241
           T T+T S P+++RTP + +R F PA
Sbjct: 49  TITYTSSAPKKKRTPLRFTRRFSPA 73


>Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical
           protein F19H6.3 protein.
          Length = 914

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 304 LFVKISETEKSGDHSPQSKNDGTWDSKLSPV 396
           LF  + +T  +GD    + NDG W + +S V
Sbjct: 812 LFKNLVQTRGAGDWDGMNLNDGEWSTAVSDV 842


>AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical
           protein H42K12.3 protein.
          Length = 522

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 362 FFDWGEWSPLFSVSE--IFTKRSLNFFSTLSSEMDLSTSSIVVP 237
           F DW +W+P    +E  +  +R LN    L + M +     ++P
Sbjct: 384 FSDWSDWTPCTKSNERQVRRRRCLNLRKCLGALMQVQNCPEIIP 427


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,742,473
Number of Sequences: 27780
Number of extensions: 195278
Number of successful extensions: 643
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)