Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19e24f
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc... 64 2e-11
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 55 1e-08
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo... 40 3e-04
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 32 0.078
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 29 0.72
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.7
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces... 27 2.2
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.9
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 6.7
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 6.7
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 8.9
SPBC1683.10c |pcl1||ferrous iron transporter Pcl1|Schizosaccharo... 25 8.9
>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 64.1 bits (149), Expect = 2e-11
Identities = 33/126 (26%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Frame = +1
Query: 307 DKRARRKLIVASVLCVIFMIGEIVGGYLSNSLAIATDAAHLLTDFASFMISLFSLWVANR 486
D + ++I+ + V F EI+ GY +SLA+ D+ H+L D S +++L++ +A+
Sbjct: 3 DLARQTRIILLLGIDVTFFFIEIITGYAIDSLALIADSFHMLNDIVSLLVALWATRLAHS 62
Query: 487 PATR-RMSFGWYRAEVIGALTSVLLIWVVTGVLVYLAVQRVLYQDFNIDATVMLITSAVG 663
+ + ++GW RAE++GAL++ + + + + A++R + + T+M ++G
Sbjct: 63 TSHEPKYTYGWQRAEILGALSNGVFLIALCMFIFMEAIERFIEPPSVSNPTLMFFVGSLG 122
Query: 664 VAVNLV 681
+ N V
Sbjct: 123 LLSNFV 128
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 54.8 bits (126), Expect = 1e-08
Identities = 32/125 (25%), Positives = 66/125 (52%)
Frame = +1
Query: 307 DKRARRKLIVASVLCVIFMIGEIVGGYLSNSLAIATDAAHLLTDFASFMISLFSLWVANR 486
DK +R + +L V +M +++ G +NSL + +DA H+ D + ++ L + +A
Sbjct: 344 DKESR-SIFYFFLLNVSYMFVQVIYGLWTNSLGLISDAIHMAFDCIAILVGLVATTLAKM 402
Query: 487 PATRRMSFGWYRAEVIGALTSVLLIWVVTGVLVYLAVQRVLYQDFNIDATVMLITSAVGV 666
P FG+ + E + T+ + + +++ +V A+ R L+ ++ +L+ S +G+
Sbjct: 403 PLNYAYPFGFAKIEALSGFTNGIFLVLISFSIVGEALYR-LFHPPQMNTDQLLLVSFLGL 461
Query: 667 AVNLV 681
VNLV
Sbjct: 462 VVNLV 466
>SPCC1020.03 |||mitochondrial iron ion
transporter|Schizosaccharomyces pombe|chr 3|||Manual
Length = 397
Score = 40.3 bits (90), Expect = 3e-04
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +1
Query: 376 VGGYLSNSLAIATDAAHLLTDFASFMISLFSLWVANRPATRRMSFGWYRAEVIGALT-SV 552
+GG S + DAAH L D S +++L +L + ++ T++ G+ + E IG T S
Sbjct: 93 IGGVALQSSILVADAAHQLGDTLSDLVTLATLKICSKKPTQKYPAGFGKWETIGTFTVSG 152
Query: 553 LLIWVVTGV 579
LL+ V G+
Sbjct: 153 LLVAVSVGI 161
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 32.3 bits (70), Expect = 0.078
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 569 TTQMSSTDVSAPITSARYHPNDIRLVAGLLATHSENKDIMKLAKSVSRC 423
T Q+S T VS P+ + +++ LVAG+LAT + + + A S C
Sbjct: 841 TFQLSKTVVSIPMVNFSEAVSNLGLVAGILATSVDRRHVQLFADSKKVC 889
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 29.1 bits (62), Expect = 0.72
Identities = 21/86 (24%), Positives = 41/86 (47%)
Frame = -2
Query: 587 YTSTPVTTQMSSTDVSAPITSARYHPNDIRLVAGLLATHSENKDIMKLAKSVSRCAASVA 408
Y + TT + + P S +DI ++ L + S + D + + + + AASVA
Sbjct: 137 YETVMYTTAVYGDSATTPAASEAQASSDI--LSSLASLSSASTDNLAASVTPTTVAASVA 194
Query: 407 IAKLLDKYPPTISPIMNMTHSTLATM 330
+ D TIS +++ S+++T+
Sbjct: 195 SSVDTDSASATISSVVDSATSSVSTV 220
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.7
Identities = 29/141 (20%), Positives = 52/141 (36%)
Frame = -2
Query: 608 STRCTARYTSTPVTTQMSSTDVSAPITSARYHPNDIRLVAGLLATHSENKDIMKLAKSVS 429
+T + YTSTPVT+ + S P+TS + +L T + + + +
Sbjct: 497 TTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYT---STPVTSTPLATT 553
Query: 428 RCAASVAIAKLLDKYPPTISPIMNMTHSTLATMXXXXXXXXXXXFRDL*QCLSASEMLPF 249
C S ++ P T +P+ + ++ ++ L S +
Sbjct: 554 NCTTSTSV-------PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPITS 606
Query: 248 LFSESSPSALVSMTAQHPVDG 186
S SS S VS + P+ G
Sbjct: 607 PNSTSSSSTQVSWNSTTPITG 627
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -2
Query: 671 TATPTAEVMSMTVASMLKSW*STRCTARYTSTPVTTQMSSTDVSAPITS 525
T PT+ +T + S + TSTP+ T +T S P TS
Sbjct: 412 TVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTS 460
Score = 26.2 bits (55), Expect = 5.1
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Frame = -2
Query: 608 STRCTARYTSTPVTTQMSSTDVSAPITSARYHPNDIRLVAGLLATHSENKDIMKLAKSVS 429
+T + YTSTPVT+ +T TS Y V T S + + + +
Sbjct: 474 TTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTP---VTSSNYTISSSTPVTSTPVTTT 530
Query: 428 RCAASVAIAKLLDKYPPTISPI--MNMTHST 342
C S ++ L P T +P+ N T ST
Sbjct: 531 NCTTSTSV--LYTSTPVTSTPLATTNCTTST 559
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -2
Query: 671 TATPTAEVMSMTVASMLKSW*STRCTARYTSTPVTTQMSSTDVSAPITS 525
T+TP +T + S + TSTP+TT +T S P TS
Sbjct: 459 TSTPVTST-PLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTS 506
>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 333
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = +1
Query: 550 VLLIWVVTGVLVYLAVQRVLYQDFNIDATVMLITSAVGVAVNLVM 684
V++IW++ V+ Y R + + N+D ++ T ++ A+ L +
Sbjct: 175 VVIIWLLWVVICYTLFLRAKFGNLNLDKALICSTCSISAALLLFL 219
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +1
Query: 76 DSMNDSKPLVQYNDGHVSYGTDNQIRGRRVIFCVHGNPSTGCCAVIETSADGDDSEKR 249
+ + D+ V + + + T N +R + + N +G C++ +T+ D D SEK+
Sbjct: 380 EQVADASQFVSFLETTKTVATSNLRSTKRKLSEILENGQSGDCSLTDTNVDFDISEKQ 437
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 671 TATPTAEVMSMTVASMLKSW*STRCTARYTSTPVTTQMSSTDVSAPITSARY 516
T T + S+T S + S YTSTP TT +S T A ++ Y
Sbjct: 752 TTTTSTSTGSVTTTSTTATA-SCTLPISYTSTPTTTSISGTCNGATFDASLY 802
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 570 HHPDEQHRRQRADHLRAVPPE 508
H P Q+RR+R++HL PPE
Sbjct: 141 HAPHSQNRRRRSNHLNN-PPE 160
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 79 SMNDSKPLVQYNDGHVS-YGTDNQI 150
S+ DS+ + YNDG+V Y D QI
Sbjct: 442 SVTDSRIAIAYNDGNVRFYDLDTQI 466
>SPBC1683.10c |pcl1||ferrous iron transporter
Pcl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 511 GWYRAEVIGALTSVLLIWVVTGVLVYLAVQRVLYQDFNIDATVMLITSAVGV 666
GW RA V+GA +L + +G+LV + N D V+LIT G+
Sbjct: 19 GWLRASVLGANDGILSL---SGLLVGVVAA-------NADIKVILITGVAGL 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,624
Number of Sequences: 5004
Number of extensions: 44304
Number of successful extensions: 206
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -