Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19e24f
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0214 - 1615519-1616775 140 1e-33
08_02_0707 - 20212190-20214592 67 2e-11
03_02_0982 + 12925861-12926211,12926309-12926378,12927190-129272... 56 2e-08
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205... 31 1.0
09_03_0040 + 11816056-11819069,11819837-11820428 29 3.1
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 29 3.1
10_08_0812 + 20752637-20752784,20752856-20753034,20754043-207541... 29 4.0
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 29 4.0
06_03_1053 + 27224824-27225618 29 4.0
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 29 4.0
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508... 29 5.3
11_06_0243 + 21648049-21648318,21648492-21648668 28 7.1
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 28 7.1
03_06_0514 + 34450178-34450244,34450821-34451047,34451140-344512... 28 7.1
02_02_0694 + 13013966-13014361 28 7.1
10_08_1034 + 22461397-22461702,22462311-22462524,22464936-224649... 28 9.3
09_04_0258 - 16175258-16176069,16176111-16176414 28 9.3
07_03_1436 - 26543846-26546806 28 9.3
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 28 9.3
03_05_0456 - 24498212-24499581,24502660-24503071 28 9.3
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768... 28 9.3
>05_01_0214 - 1615519-1616775
Length = 418
Score = 140 bits (338), Expect = 1e-33
Identities = 68/136 (50%), Positives = 95/136 (69%), Gaps = 4/136 (2%)
Frame = +1
Query: 289 SRNEEIDKRAR----RKLIVASVLCVIFMIGEIVGGYLSNSLAIATDAAHLLTDFASFMI 456
S N D R R RKLI+A +LC+IFM E+VGG +NSLAI TDAAHLL+D A+F I
Sbjct: 41 SSNSSKDARERMASMRKLIIAVILCIIFMAVEVVGGIKANSLAILTDAAHLLSDVAAFAI 100
Query: 457 SLFSLWVANRPATRRMSFGWYRAEVIGALTSVLLIWVVTGVLVYLAVQRVLYQDFNIDAT 636
SLFSLW A AT + S+G++R E++GAL S+ LIW++ G+LVY A+ R++ + + +
Sbjct: 101 SLFSLWAAGWEATPQQSYGFFRIEILGALVSIQLIWLLAGILVYEAIVRLINESGEVQGS 160
Query: 637 VMLITSAVGVAVNLVM 684
+M SA G+ VN++M
Sbjct: 161 LMFAVSAFGLFVNIIM 176
>08_02_0707 - 20212190-20214592
Length = 800
Score = 66.9 bits (156), Expect = 2e-11
Identities = 34/126 (26%), Positives = 70/126 (55%)
Frame = +1
Query: 304 IDKRARRKLIVASVLCVIFMIGEIVGGYLSNSLAIATDAAHLLTDFASFMISLFSLWVAN 483
+++R RK+ ++ +M E G++S+SL + +DA H+L D A+ I L++ ++A
Sbjct: 355 LNERKSRKIAAFLLINTAYMFVEFTSGFMSDSLGLISDACHMLFDCAALAIGLYASYIAR 414
Query: 484 RPATRRMSFGWYRAEVIGALTSVLLIWVVTGVLVYLAVQRVLYQDFNIDATVMLITSAVG 663
PA ++G R EV+ + + + +V ++V + +R+L + I + +L S G
Sbjct: 415 LPANGLYNYGRGRFEVLSGYVNAVFLVLVGALIVLESFERIL-EPREISTSSLLTVSIGG 473
Query: 664 VAVNLV 681
+ VN++
Sbjct: 474 LVVNVI 479
Score = 31.5 bits (68), Expect = 0.76
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -1
Query: 597 HGEVHQHARHHPDEQHRRQRADH 529
HG H H HH +H +Q DH
Sbjct: 581 HGHDHHHHHHHDHSEHHQQSGDH 603
>03_02_0982 +
12925861-12926211,12926309-12926378,12927190-12927287,
12927467-12927615,12928083-12928198,12928521-12928617,
12929122-12929206,12929303-12929365,12929505-12929645
Length = 389
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Frame = +1
Query: 283 HRSRNEEIDKRARRKLIVASVLC-VIFMIGEIVGGYLSNSLAIATDAAHLLTDFASFMIS 459
H EE+ A ++ + V+ +G+ V GYLS S AIA DAAH L+D ++
Sbjct: 64 HHHHGEEVGGEASERIFRLGLAADVVLTVGKAVTGYLSGSTAIAADAAHSLSDIVLSGVA 123
Query: 460 LFSLWVANRPATRRMSFGWYRAEVIGALTSVLLIWVVTGVLVYLA 594
L S A P + +G + E +GAL ++ V G + + A
Sbjct: 124 LLSYKAAKAPRDKEHPYGHGKFESLGALGISSMLLVTAGGIAWHA 168
>03_01_0265 +
2046918-2049102,2052385-2052452,2052542-2052652,
2053164-2053250,2053476-2053684,2054115-2054340,
2054473-2054510,2054657-2054714,2055363-2055662,
2055832-2055903,2055988-2056112,2056240-2056312,
2056417-2056521
Length = 1218
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +1
Query: 526 EVIGALTSVLLIWVVTGVLVYLAVQRVLYQDFNIDATVMLITSA 657
+++ + +I+ + +L++ AVQ +LY+D+N D L T++
Sbjct: 704 DMVICIMQFCVIFFLVAMLLFFAVQDLLYKDYNFDQKFSLTTTS 747
>09_03_0040 + 11816056-11819069,11819837-11820428
Length = 1201
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 285 QIAKRRDRQESEKETHRGQ-RAVRHIHDRGNSRRVLVQQLSDSDRRRA 425
++ RD +E+E GQ +HD G +R L+ L+ +RRA
Sbjct: 245 EVTSDRDGRETESRVGVGQLERTNDVHDGGRKKRWLMSVLNPPPKRRA 292
>02_01_0190 +
1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 100 LVQYNDGHVSYGTDNQIRGRRVIFCVHGNPSTGCCAVIETSADGDDSE 243
LV YNDGH++ + +VI+ H P C + ++ A DS+
Sbjct: 497 LVGYNDGHMTIWDVQKGTAAKVIYGEHTAPVVHACFIRQSKAITGDSK 544
>10_08_0812 +
20752637-20752784,20752856-20753034,20754043-20754126,
20754835-20755002,20757120-20757266
Length = 241
Score = 29.1 bits (62), Expect = 4.0
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Frame = +1
Query: 325 KLIVASVLCVIFMIGEIVGGYLSNSLAIATDAAHLL-TDFASFMISLFSLWVANRPAT-- 495
+++ A CV +G +VG +++ +AT++ L + ++FS+ VA
Sbjct: 37 RVLCAVATCVFAAVGSVVGAVTGSAIGLATESGMLRGAGIGAISGAVFSIEVAESSRDLW 96
Query: 496 -RRMSFGW---YRAEVIGALTSVLLIWVVTGVLVYLAVQ 600
S W Y ++I +L S L+ G V AVQ
Sbjct: 97 HSSDSAVWCLVYMVDIISSLLSGRLVREKVGPAVQSAVQ 135
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = +3
Query: 345 AVRHIHDRGNSRRVLVQQLSDSDRRRAPAHRLRQLHDILVLAMGR*QTR 491
++ H+ + + + + +SD + + P + L + D LV+ +GR QT+
Sbjct: 614 SIEHLGRKSHLKEGTQETMSDKEPEKVPENYLTRAFDQLVVVLGRFQTK 662
>06_03_1053 + 27224824-27225618
Length = 264
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 214 ETSADGDDSEKRNGSISEAERHCHRSRNEEIDKRARRKLIVASV 345
+ + GD +R + + E C R R + + R R L+VA V
Sbjct: 151 DDDSHGDSKRRRKAAAAAEEEECGRGRRQYEEMRDRYPLLVAEV 194
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -1
Query: 597 HGEVHQHARHHPDEQHRRQRADHL-RAVPPERHP 499
H H H HH ++Q ++Q HL PP HP
Sbjct: 38 HHHHHGHHGHHHEQQQQQQHHHHLGPPPPPPPHP 71
>04_03_0496 +
16549333-16549465,16549620-16550020,16550412-16550880,
16552038-16552076,16553151-16553272,16553531-16553677,
16554097-16554186,16554274-16554398,16554567-16554772,
16554951-16555075,16555528-16555722,16556295-16556337,
16556762-16557267,16558198-16558570,16559772-16560062,
16560132-16561101,16561196-16561892,16562378-16562658,
16562731-16563400,16563860-16564034,16565103-16565659
Length = 2204
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = +3
Query: 273 KALSQIAKRRDRQESEKETHRGQRAVRHIHDRGNSRRVLVQQLSDSDRRRAPAHRLRQL 449
KA SQ +R D + E +GQR + G R L Q R A H+ RQL
Sbjct: 204 KAASQHVERLDTAAKD-EMQKGQRVQELAAELGTVERTLAQPGLKERERSALTHKQRQL 261
>11_06_0243 + 21648049-21648318,21648492-21648668
Length = 148
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +1
Query: 319 RRKLIVASVLCVIFMIGEIVGGYLSNSLAIAT--DAAHLLTDFASFMISLF-SLWVANRP 489
RR ++VA+VLC + + + SN A A D + +S + + W AN+P
Sbjct: 4 RRVVLVAAVLCAV--VAMVTAQEASNVRATYHYYRPAQNNWDLGAPAVSAYCATWDANKP 61
Query: 490 ATRRMSFGW 516
+ R +GW
Sbjct: 62 LSWRQKYGW 70
>05_05_0155 +
22787658-22787930,22788029-22788096,22789600-22789915,
22790207-22790323
Length = 257
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -1
Query: 606 HPLHGEVHQHARHHPDEQHRRQRADHLRAVPPERHP 499
HP H H H HHP H H PP HP
Sbjct: 49 HPPH---HPHPPHHPHPPHHPHPPHHPH--PPHHHP 79
>03_06_0514 +
34450178-34450244,34450821-34451047,34451140-34451275,
34451818-34451951,34452037-34452142,34452602-34452687,
34453204-34453365,34453918-34454034,34454222-34454464
Length = 425
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 142 NQIRGRRVIFCVHGNPSTGCCAVIETSADG 231
+ + RV+F V GNP C +++ S DG
Sbjct: 177 HDLHAYRVLFDVDGNPRLSCFGLMKNSRDG 206
>02_02_0694 + 13013966-13014361
Length = 131
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -1
Query: 585 HQHARHHPDEQHRRQRADHLRAVPPERHPSGGGSVSDP 472
H H RHH HR + + VPP +G G DP
Sbjct: 78 HHHHRHHGHHHHRGHDRWNRKGVPPT--AAGPGEEVDP 113
>10_08_1034 +
22461397-22461702,22462311-22462524,22464936-22464997,
22465035-22465381,22465495-22465591
Length = 341
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 606 HPLHGEVHQHARHHPDEQHRRQ-RADHLRAVPPERH 502
+ +H + H HHP+E++++ R RA P + H
Sbjct: 36 YTVHAATYPHHHHHPEEEYQQHPRLKLFRADPLDYH 71
>09_04_0258 - 16175258-16176069,16176111-16176414
Length = 371
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -1
Query: 609 EHPLHGEVHQHARHHPDEQHRRQRADHLRAVPPERHPSGG 490
+HP GE + A D +HRR R + P P GG
Sbjct: 113 DHPEEGEFGRGAAQGEDGEHRRGRGE--AGAPEAEQPRGG 150
>07_03_1436 - 26543846-26546806
Length = 986
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 597 HGEVHQHARHHPDEQHRRQRADHLRAVPPERHP 499
HGE + H P E+HR +R + + PP +HP
Sbjct: 367 HGE---RSVHSPPERHRERRVERPHS-PPHQHP 395
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -1
Query: 579 HARHHPDEQHRRQRADHLRAVPPERHPSGGGS 484
H HH H H PE H SGGG+
Sbjct: 70 HGDHHHGHHHHHHGHGHSHHHGPEVHGSGGGA 101
>03_05_0456 - 24498212-24499581,24502660-24503071
Length = 593
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -2
Query: 530 TSARYHPNDIRLVAGLLATHSENKDIMKLAKSVSRCAASVAIAKLLDKYPPTIS 369
T +HPND R+ A LA D + +A C SV K ++ +S
Sbjct: 181 TLLNHHPNDFRIHAASLAADYSRLDPIAVAVIAIICLLSVLSTKASSRFNYVLS 234
>02_04_0480 -
23274945-23275196,23275558-23275623,23276709-23276851,
23276947-23277063,23277219-23278683,23279561-23280730
Length = 1070
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 226 DGDDSEKRNGSISEAERHCHRSRNEEIDKRARR 324
DGDD EK+ S + +++ +EE KR R+
Sbjct: 136 DGDDEEKKKRSRHDMKKNSRNDADEEKRKRKRK 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,693,087
Number of Sequences: 37544
Number of extensions: 334482
Number of successful extensions: 1613
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1598
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -