Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19e24f
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   4.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   4.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   7.1  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 552 HRRQRADHLRAVP-PERHPSGGGSVSDP*REQGYH 451
           H R +  +L   P P+ + SGG  ++     Q YH
Sbjct: 131 HSRDQEQNLYLTPSPQMYSSGGEEITPRQSHQSYH 165


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 603 PLHGEVHQHARHHPDEQHRRQ 541
           P H ++H H   HP  Q + Q
Sbjct: 809 PPHQQLHHHQSTHPQAQAQAQ 829



 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 638 TVASMLKSW*STRCTARYTSTPVTTQMSSTDVSAP 534
           T+ ++  +  +T  T   T+TP TTQ +S     P
Sbjct: 657 TITTITTTTTTTTTTTTTTTTPNTTQNASATTPPP 691


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 294 KRRDRQESEKETHRGQRAVRHIH 362
           KRR R+ +     RG++  RHI+
Sbjct: 441 KRRQREAAGNCRKRGEKIARHIN 463


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 439 FASFMISLFSLWVANRPATRRMSFGWYRAEVIGA 540
           F SF++S   LW  N+    RMS      E++GA
Sbjct: 395 FWSFIVSTILLWFINKIIPIRMSI---HDELLGA 425


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 242 SESSPSALVSMTAQHPVDG 186
           S   PSA+++M   HP+ G
Sbjct: 345 SAGLPSAILAMRLSHPLHG 363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,450
Number of Sequences: 438
Number of extensions: 3154
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)