Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19e22r
(751 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75533-7|CAA99820.1| 285|Caenorhabditis elegans Hypothetical pr... 163 1e-40
Z81575-9|CAB04635.1| 130|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z54216-7|CAI46586.1| 299|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z54216-6|CAB76416.2| 319|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z78065-9|CAI79172.1| 273|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z78064-11|CAI79210.1| 273|Caenorhabditis elegans Hypothetical p... 28 6.2
AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical... 28 6.2
AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine sy... 28 6.2
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 28 6.2
AC091267-1|AAK31565.1| 789|Caenorhabditis elegans Hypothetical ... 28 6.2
AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation transp... 28 8.1
AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation transp... 28 8.1
AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical... 28 8.1
AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical... 28 8.1
>Z75533-7|CAA99820.1| 285|Caenorhabditis elegans Hypothetical
protein C54G4.8 protein.
Length = 285
Score = 163 bits (396), Expect = 1e-40
Identities = 74/137 (54%), Positives = 94/137 (68%)
Frame = -3
Query: 710 PPDLSLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYFPGGAISMAQVLFDEAA 531
PPDLSL+ R GG+DY+F+LLTGY+E PAGV + +G+ YNPYFPGG ISM Q LFDE
Sbjct: 146 PPDLSLMALARHGGDDYVFSLLTGYLEAPAGVKVDDGKAYNPYFPGGIISMPQQLFDEGI 205
Query: 530 EYSDGTPATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWST 351
EY DGTPAT SQ AKDV+ F+ W +EP D R++ +K + +A V+ Y KRH WS
Sbjct: 206 EYKDGTPATMSQQAKDVSAFMHWAAEPFHDTRKKWALKIAALIPFVAVVLIYGKRHIWSF 265
Query: 350 LKSRKLAYKPVSKK*TP 300
KS+K +K V + P
Sbjct: 266 TKSQKFLFKTVKGREPP 282
>Z81575-9|CAB04635.1| 130|Caenorhabditis elegans Hypothetical
protein R08H2.10 protein.
Length = 130
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 39 DHLTLQFDCATASQWQNAINIIT 107
DH+TL FDCAT SQ + + +T
Sbjct: 26 DHVTLSFDCATTSQKKITLKNVT 48
>Z54216-7|CAI46586.1| 299|Caenorhabditis elegans Hypothetical
protein T24H10.7b protein.
Length = 299
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 611 LREGQNYNPY-FPGGAISMAQVLFDEAAEYSDGTPATASQLAKDVATFL 468
LR Q N Y F GGA+S + + A +S TPA+AS + V + L
Sbjct: 44 LRVMQTTNKYEFTGGAVSSPVLPVLQTAAFSPITPASASDMHTIVMSLL 92
>Z54216-6|CAB76416.2| 319|Caenorhabditis elegans Hypothetical
protein T24H10.7a protein.
Length = 319
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 611 LREGQNYNPY-FPGGAISMAQVLFDEAAEYSDGTPATASQLAKDVATFL 468
LR Q N Y F GGA+S + + A +S TPA+AS + V + L
Sbjct: 64 LRVMQTTNKYEFTGGAVSSPVLPVLQTAAFSPITPASASDMHTIVMSLL 112
>Z78065-9|CAI79172.1| 273|Caenorhabditis elegans Hypothetical
protein F57B1.8 protein.
Length = 273
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 214 INLFYLPSRVYFVTRGGLL*LCYHAWSRRRETVL 113
I+ F L S V + GG L LC+ WSR ++ L
Sbjct: 6 ISSFVLSSLVSTILTGGFLVLCFILWSRFKQVRL 39
>Z78064-11|CAI79210.1| 273|Caenorhabditis elegans Hypothetical
protein F57B1.8 protein.
Length = 273
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 214 INLFYLPSRVYFVTRGGLL*LCYHAWSRRRETVL 113
I+ F L S V + GG L LC+ WSR ++ L
Sbjct: 6 ISSFVLSSLVSTILTGGFLVLCFILWSRFKQVRL 39
>AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical
protein Y46G5A.19 protein.
Length = 314
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -3
Query: 632 EPPAGVVLREGQNYNPYFPGGAISM--AQVLFDEAAEYSD 519
E P V+ +GQ +PG A S+ +VLF E ++Y D
Sbjct: 26 EEPTKVLKSDGQEMGGAWPGQAFSLQVKKVLFHEKSKYQD 65
>AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine
synthase protein.
Length = 314
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -3
Query: 632 EPPAGVVLREGQNYNPYFPGGAISM--AQVLFDEAAEYSD 519
E P V+ +GQ +PG A S+ +VLF E ++Y D
Sbjct: 26 EEPTKVLKSDGQEMGGAWPGQAFSLQVKKVLFHEKSKYQD 65
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = +1
Query: 424 VICRRSSSSGSEHHFKKVATSLASCDAVAGVPSLYSAASSNRTCAIEMAPPGKYGL*FCP 603
VIC+ G E+ K ATS + G L S+NRT + PG GL C
Sbjct: 1972 VICQCPQGLGGEYCEKITATSCHQLECKNGGYCLKPDPSANRTSPTCLCSPGFKGL-LCS 2030
Query: 604 SRS 612
S +
Sbjct: 2031 SNA 2033
>AC091267-1|AAK31565.1| 789|Caenorhabditis elegans Hypothetical
protein Y37B11A.1 protein.
Length = 789
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 614 LHQQEVPCNQSVARRCNLRRPYVPSRSETS 703
++ PCNQS+ +C + P +P R + S
Sbjct: 675 MNDPNAPCNQSIPPKCPKKVPVLPVRQKRS 704
>AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1121
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 638 YMEPPAGVVLREGQNYNPYFPGGAISMAQVLF 543
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
>AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1045
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 638 YMEPPAGVVLREGQNYNPYFPGGAISMAQVLF 543
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
>AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical
protein Y105E8A.12b protein.
Length = 1045
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 638 YMEPPAGVVLREGQNYNPYFPGGAISMAQVLF 543
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
>AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical
protein Y105E8A.12a protein.
Length = 1121
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 638 YMEPPAGVVLREGQNYNPYFPGGAISMAQVLF 543
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,381,110
Number of Sequences: 27780
Number of extensions: 362248
Number of successful extensions: 998
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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