Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19e22f
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2... 217 1e-57
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces... 29 0.76
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.76
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 27 2.3
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 2.3
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 27 3.1
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi... 27 3.1
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 26 5.4
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 26 7.1
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 25 9.4
>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 217 bits (531), Expect = 1e-57
Identities = 100/181 (55%), Positives = 126/181 (69%)
Frame = +2
Query: 239 HPPHNPWNHSGWFSSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEA 418
H + W S S DHAS+RRG++VY++VC ACHSL IA+R+LV VTHT DEAK A
Sbjct: 71 HFIQHDWPQSKVLSGFDHASLRRGFQVYREVCSACHSLNLIAWRHLVGVTHTADEAKQMA 130
Query: 419 AEVMIKDGPDEEGNYFERPGKLSDYLPSXXXXXXXXXXXXXXXXXXDLSLICSGRKGGED 598
+EV +DGPD+EGN F+RPGKLSD+LP DLS + GR GG+D
Sbjct: 131 SEVEYEDGPDDEGNMFKRPGKLSDFLPPPYPNVEAARASNNGAAPPDLSCVVRGRHGGQD 190
Query: 599 YIFALLTGYMEPPAGVVLREGQNYNPYFPGGAISMAQVLFDEAAEYSDGTPATASQLAKD 778
YI++LLTGY EPPAGV + +G N+NP+FPG I+MA+ LFD+A E+ DGTPAT +Q AKD
Sbjct: 191 YIYSLLTGYTEPPAGVEVPDGMNFNPFFPGTQIAMARPLFDDAVEFEDGTPATTAQAAKD 250
Query: 779 V 781
V
Sbjct: 251 V 251
>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 257
Score = 29.1 bits (62), Expect = 0.76
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 581 RKGGEDY-IFALLTGYMEPPAGVVLREGQNYNPYF 682
R G Y + A L + PP G ++R +Y PYF
Sbjct: 197 RNNGPSYSLLASLASQLPPPYGAMIRHTTSYVPYF 231
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.76
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -1
Query: 720 SNRTCAIEMAPPGKYGL*FCPSRSTTPAGGSM*PVSSAKM*SSPPLRPEQIRDKS 556
SN +I + P G+ P RS G P+SS++ S+PP P I +S
Sbjct: 345 SNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRS 399
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -2
Query: 680 SMDCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGKHH 540
S D +SV +LH++ + N S R+ + R+PY SE S + K H
Sbjct: 103 SFDHASV--TSLHRRSLSSNTSTPRKYHSRKPY----SEPSVIDKEH 143
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 632 PPAGVVLREGQNYNPYFPGGAISMAQVLFDEAAEYSDGTPATAS 763
P + V +NY PY ++S + +L + S TP TAS
Sbjct: 60 PTSNVASNTSENY-PYTGSKSLSSSSILSNSTISTSSSTPITAS 102
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 611 LLTGYMEPPAGVVLREGQNYNPYFPGGAIS 700
LL G E P +REGQ Y Y G+I+
Sbjct: 395 LLAGTTESPGEYYVREGQRYKSYRGMGSIA 424
>SPBC1539.01c |||mitochondrial ribosomal protein subunit
L15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 60 TSFEKIWSSLASGLSAV 110
+SFEKI+SS+ SGL AV
Sbjct: 159 SSFEKIYSSIVSGLVAV 175
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 186 PTPPPTTPKVDSHTFLFFCPSLSVGGQLTSLRPN*TI 76
P+ T P+V SH FL C SLS T P+ +I
Sbjct: 243 PSTRITIPEVFSHPFLMGCTSLSSMDSTTPPTPSLSI 279
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 638 QEVPCNQSVARRCNLRRPY 582
+E+PC Q V R C+L++ Y
Sbjct: 103 EEMPCEQLVRRVCDLKQGY 121
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 29 WRPPSVGFVGHVF*KNM 79
W+ PS+GFV +F N+
Sbjct: 61 WKSPSIGFVNRIFHPNI 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,389,317
Number of Sequences: 5004
Number of extensions: 68769
Number of successful extensions: 227
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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