Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19e22f
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.5  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   7.5  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.9  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   9.9  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 2   IFHYDGFQTWRPPSV 46
           I HY G   W PP++
Sbjct: 126 ILHYTGKVLWTPPAI 140


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 2   IFHYDGFQTWRPPSV 46
           I H+ G   W+PP++
Sbjct: 126 ILHHTGKVVWKPPAI 140


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 8   HYDGFQTWRPPSV 46
           +Y G   W+PP+V
Sbjct: 136 YYSGLVVWQPPAV 148


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 100 CQLSTNTQGWTKKQKSVAV 156
           CQ  T + GWT  ++S ++
Sbjct: 21  CQTFTYSHGWTNGKRSTSL 39


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -1

Query: 744 PSLYSAASSNRTCAIEMAPPGKYGL 670
           P LYS A S R C   +  P   GL
Sbjct: 9   PLLYSVAMSQRLCIQLVVGPYVIGL 33


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -1

Query: 744 PSLYSAASSNRTCAIEMAPPGKYGL 670
           P LYS A S R C   +  P   GL
Sbjct: 8   PLLYSVAMSQRLCIQLVVGPYVIGL 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,431
Number of Sequences: 438
Number of extensions: 5067
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)