Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19e20r
(823 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322 31 0.84
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 31 0.84
02_04_0386 - 22529291-22529418,22529860-22529941 31 1.5
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 30 1.9
04_03_0122 - 11511886-11512569 30 1.9
09_04_0109 - 14674980-14675004,14675861-14676468 30 2.6
09_01_0174 + 2504058-2504253,2504929-2505076,2505265-2505456,250... 29 3.4
08_01_1052 + 10712380-10712545,10713229-10713386,10713495-10714199 29 3.4
06_02_0307 + 14122217-14122459 29 3.4
04_04_1488 - 33922253-33922361,33922459-33922649,33922752-339241... 29 4.5
08_01_0534 - 4635122-4635380,4635716-4635837 29 5.9
05_01_0126 + 858259-858489,858641-859189,859545-860162 29 5.9
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180... 29 5.9
04_04_0921 - 29431812-29432786 28 7.8
04_01_0363 + 4754650-4755912 28 7.8
03_06_0690 - 35571816-35572586 28 7.8
02_05_0254 - 27177167-27177393,27177476-27177725,27177818-271780... 28 7.8
>06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322
Length = 665
Score = 31.5 bits (68), Expect = 0.84
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 582 GGIWSSSASRHRGGDQRHRKTHMPQ 508
GG+W + +RH GD R TH P+
Sbjct: 41 GGVWQETEARHLAGDSIIRDTHYPR 65
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 31.5 bits (68), Expect = 0.84
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 356 ATIVHEWMHILGFLHMQSTHNRDD 285
AT++HE MH+LGF TH RD+
Sbjct: 291 ATLIHEVMHVLGFDPHAFTHFRDE 314
>02_04_0386 - 22529291-22529418,22529860-22529941
Length = 69
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +2
Query: 224 CRCRSCAEDQA*CFL*RS*HSRLCCGWTACGGSRGCAS 337
C C+ C + C S HS CC W G GC S
Sbjct: 34 CNCKGCCDYDGKCMSYCSGHSGPCCKWK--GKCHGCCS 69
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 396 PCPQRARSGL-FP-PRHHRARVDAHPRLPPHAVHPQQ 292
P P+ R G+ P PRHHR R P LPP + +Q
Sbjct: 54 PAPETHRPGIRHPVPRHHRKRPHVAPPLPPPSSSERQ 90
>04_03_0122 - 11511886-11512569
Length = 227
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = -3
Query: 494 EAGDTAFVRLTGGAGGCYAHVGYW-ESRGVHVL 399
E GD R G GGC HV W S HVL
Sbjct: 165 ELGDVRAARFAGATGGCGIHVSQWRRSCRPHVL 197
>09_04_0109 - 14674980-14675004,14675861-14676468
Length = 210
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -2
Query: 438 PRRLLGITRRARVEPCPQRARSGLFPPRH-HRAR 340
P T R R PC Q ++SG PP H H AR
Sbjct: 71 PTVAASFTHRPRSPPCLQNSKSGSPPPSHLHHAR 104
>09_01_0174 +
2504058-2504253,2504929-2505076,2505265-2505456,
2505878-2506006,2506368-2506537,2506946-2507076,
2507391-2507468
Length = 347
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 285 VVSVVGGLHV--EEAEDVHPLVHDGGVAETAHSWLVAGKVQHVHAS*FP 425
VV+VV L + E+ D PLV GGV E W ++G+V + FP
Sbjct: 266 VVAVVRRLKLCGEDGMDQFPLVLVGGVLEGNKKWNISGEVVRCISKVFP 314
>08_01_1052 + 10712380-10712545,10713229-10713386,10713495-10714199
Length = 342
Score = 29.5 bits (63), Expect = 3.4
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Frame = +3
Query: 306 LHVEEAEDVHPLVHDGGVAE----TAHSWLVAGKVQHVHAS*FPVTDVGITSTSSAGESD 473
+HV + D H ++ A A L G+V + A+ FP V AGE+
Sbjct: 237 VHVRDVADAHARAYESPAARGRYLCAGRTLHRGEVCRILAALFPGYPVPTRCKGDAGETA 296
Query: 474 KGC-VSSLAVTELEACV------FFDVSDPLLDGGLL 563
+GC SS + EL V +D L D GLL
Sbjct: 297 EGCRFSSRKLAELGVAVMPASQCLYDTVVSLQDKGLL 333
>06_02_0307 + 14122217-14122459
Length = 80
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 299 GWTACGGSRGCASTRARWWRGGN--SPLLARCGQGSTRARL 415
GWTA G G RW GG SP++A CG+G R L
Sbjct: 5 GWTAAGSGGG------RWSGGGLFVSPVVAGCGKGRRRPDL 39
>04_04_1488 -
33922253-33922361,33922459-33922649,33922752-33924130,
33924205-33924340,33924427-33924502,33924806-33924925,
33925005-33925082,33925605-33925695,33925805-33925889,
33925977-33926132,33926317-33926373,33926454-33926552,
33926702-33926814,33926924-33927014
Length = 926
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -3
Query: 632 WPNTKWPNNTVVW-EFGEGE 576
WPN+KW N V W E G GE
Sbjct: 313 WPNSKWRNLQVEWDEHGYGE 332
>08_01_0534 - 4635122-4635380,4635716-4635837
Length = 126
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +2
Query: 302 WTACGGSRGCASTRARWWRGGNSPLLARCGQGSTR--ARLVIPSNRRG 439
W +CGG G S R W G RC G R R + RRG
Sbjct: 75 WKSCGGRTGSRSAVGR-WTGAVEATRYRCLAGGNRVGGRRTTATGRRG 121
>05_01_0126 + 858259-858489,858641-859189,859545-860162
Length = 465
Score = 28.7 bits (61), Expect = 5.9
Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = -2
Query: 570 SSSASRHRGGD-----QRHRKTHMPQVPLPRGWRHSLC-QTHRRSWWMLCPRRLLGITRR 409
SSS SR R + Q R++ Q P P S C THR W M C RLL +
Sbjct: 277 SSSHSRSRSSEGSSSGQHQRQSRWDQPPPPPCC--SGCGTTHRVEWVMTCCHRLLCV-GC 333
Query: 408 ARVEPC 391
A V PC
Sbjct: 334 AEVNPC 339
>04_04_1242 -
32016553-32016857,32017628-32017784,32017871-32018089,
32018184-32018470,32018629-32019934,32020021-32020178,
32020250-32020335,32023106-32023173,32023297-32023340,
32023418-32023490,32023605-32023684,32023774-32023867,
32023981-32024151,32024463-32024557,32025049-32025128,
32025137-32025333,32025896-32026183
Length = 1235
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 604 PLFGNLERGNLVLVSKPPSRRGSETSKNTHASSS 503
P+ N+++ +LVLV K S S TS+ H+S S
Sbjct: 107 PIVVNIDKLDLVLVEKDNSEDLSSTSRQIHSSGS 140
>04_04_0921 - 29431812-29432786
Length = 324
Score = 28.3 bits (60), Expect = 7.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 296 CGWTACGGSRGCASTRARW 352
C W CGGSR ++ RW
Sbjct: 156 CAWLRCGGSRWWSAAGGRW 174
>04_01_0363 + 4754650-4755912
Length = 420
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 338 TRARW-WRGGNSPLLARCGQGSTRAR 412
T ARW WR G P R G+G +R R
Sbjct: 189 TVARWEWRSGGEPRRRRGGRGGSRPR 214
>03_06_0690 - 35571816-35572586
Length = 256
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 357 RHHRARVDAHPRLPPHAVHPQ 295
RHH+ +HPR PP HP+
Sbjct: 77 RHHKTSSSSHPR-PPRRAHPE 96
>02_05_0254 -
27177167-27177393,27177476-27177725,27177818-27178054,
27178138-27178296,27179454-27179527,27180929-27181172
Length = 396
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 480 CVSSLAVTELEAC-VFFDVSDPLLDGGLLTRTKFPLSKFPNNGVVRPLS 623
C+++ A ++ A VF D + + + LT P + FP+NG+ P S
Sbjct: 17 CITAAAAAKVPAIYVFGDSTADVGNNNYLTGAAVPRANFPHNGIDFPTS 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,399,535
Number of Sequences: 37544
Number of extensions: 664072
Number of successful extensions: 2383
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2382
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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