Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19e20f
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    31   0.19 
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    29   0.75 
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    28   1.7  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    27   3.0  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    27   3.0  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   3.0  
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.3  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    26   5.3  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    25   9.2  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   9.2  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    25   9.2  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    25   9.2  

>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = -3

Query: 182 LARGLVMVLAAN*LPSPDLMLSRKLLKACISSLVLTTAGVANAEQTIVTNTAIRNIVPQ 6
           L R ++M L    LP   L+  ++ LKA I+S  L  + + +A   I TN   + ++PQ
Sbjct: 17  LPRSIIMRLVKGVLPEKSLV-QKEALKAMINSATLFVSFLTSASGEIATNNNRKILMPQ 74


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 347 VLVSKPPSRRGSETSKNTHASSSVTARLETQPLSDSPAELVDVMPTSVTGNH 502
           V  SKPP+  GS    N  A    +  LE +PLSD   E   +    +  +H
Sbjct: 475 VETSKPPAVSGSTPPVNEAAVIESSNTLEKEPLSDVATEYWKIKTKDIRESH 526


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 622 NRDDYVKIVKENITPGLQHNFDIYTQDLV 708
           NR D+++ +  NIT   +H   I+T DL+
Sbjct: 704 NRKDFIEFLFHNITVSSKHTAVIFTSDLL 732


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 345 WSSSASRHRGGDQRHRKTHMPQVPLPRGWRHS 440
           WS+ A +H  GD   +K+H   VP  R  + S
Sbjct: 77  WSAIAKKHVQGDSPVKKSHSVPVPSDRSEKKS 108


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 625 RDDYVKIVKENITPGLQHNFDIYTQDLVGNLGVEYDYVSCLH 750
           R + +K V E +   L H  +I+  +L    G+   +++CLH
Sbjct: 134 RAEIIKGVSEPVDDELDHEEEIFQNNLPDPKGIPEFWLTCLH 175


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 516 HVHAS*FPVTDVGITSTSSAGESDKGCVSSLAVTELEACVFFDVSDPLLD 367
           H  AS  P +   +  ++     D+   +SLA + L      +VSDPLLD
Sbjct: 109 HFSASLLPASLSSLCDSTCGDVDDEQQFNSLATSPLSTETQSEVSDPLLD 158


>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 330 WRGGIWSSSASRHRGGDQRHR 392
           W GG WS++++  R  +QR R
Sbjct: 137 WLGGFWSTASAAVRSAEQRVR 157


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 356 SKPPSRRGSETSKNTHASSSVT 421
           SKP S + + TS+ T ASS++T
Sbjct: 287 SKPNSLKSNNTSRKTSASSAIT 308


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 556 RHATIVHEWMHILGFLHMQSTHNRDDY 636
           R++ I  +++HI+ FL + S + ++DY
Sbjct: 237 RYSFISEKFLHIVQFLRISSFNTKNDY 263


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 576 VHDGGVAETAHSWLVAGKVQHVHAS 502
           +HD G  ET  SW+  G    + A+
Sbjct: 502 LHDSGTCETGKSWMYGGMALRMAAA 526


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = +2

Query: 287 GPILSGRTTPLFGNLERGNLVLVSKPPSRR---GSETSKNTHASSSVTARLETQPL 445
           G I +G  TP  GNL           PSRR    S  S  T  SS V  +  T P+
Sbjct: 371 GNIRTGTNTPRLGNLSETTSFRSENEPSRRRLLPSSRSIMTTISSKVQIKGLTLPI 426


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 535 EPGVGCFRHATIVHEW 582
           EP V CF H  IVH+W
Sbjct: 238 EP-VFCFEHCKIVHDW 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,503,830
Number of Sequences: 5004
Number of extensions: 79579
Number of successful extensions: 226
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)