Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19e19f
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc... 29 0.42
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 28 0.73
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 27 1.7
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 2.9
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 2.9
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 26 3.9
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 25 5.1
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 25 5.1
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom... 25 6.8
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 25 6.8
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 25 6.8
>SPCC1442.08c |cox12||cytochrome c oxidase subunit
VIb|Schizosaccharomyces pombe|chr 3|||Manual
Length = 83
Score = 29.1 bits (62), Expect = 0.42
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 153 NAERLNPCLTEQEQSYKCLDKNGFDHAKCEEYFENYNT-CKKFWGKVYKDRKAKGIQP 323
N + C ++C+ G D C++++ Y + C W + + +++ G P
Sbjct: 23 NTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTFP 80
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 0.73
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 126 IKMSKLINKNAERLNPCLTEQEQSYKCLDKNGFDHAKCEEYFENYNTCKKFWGKVYK 296
+ L+N +A L L + E+ Y DK+ + +K EYF Y C + + YK
Sbjct: 210 LNSDSLVNTSASCLQSLL-DGEKVYGTSDKDFYVPSKNVEYFREYFLCIRDLSQYYK 265
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 172 RVLQNRNSLTNVWIKMVLITQNARSISKIITPAKSFGEKCTKTEKQRVYNRT 327
R + R++ N + + + + S+ +I AKS G T + Q V NRT
Sbjct: 287 RDIMTRSAFENAMVLTMTLGGSTNSVLHLIAIAKSVGITLTLDDFQAVSNRT 338
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 255 NYNTCKKFWGKVYKDRKAKGI 317
NY C FW K KD K K +
Sbjct: 969 NYKNCISFWKKYLKDFKFKSL 989
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 404 FNFLLFSFNGLKIGCFYFFPLFNLW 330
F+FL FSF + F FP F+L+
Sbjct: 179 FHFLFFSFLSFPLLSFILFPCFSLF 203
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +1
Query: 148 IKTPRD*IRVLQNRNSLTNVWIKMVLITQNARSISKIITPAKSFGEKCTKTEK 306
I T RD +R+ N++ NV + M T+ RS+S + PA+S + +++K
Sbjct: 582 ILTKRDCLRLQVLANNV-NV-VNMYGTTETQRSVSYFVVPARSQDQTFLESQK 632
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 25.4 bits (53), Expect = 5.1
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 184 NRNSLTNVWIKMVLITQNARSISKIITPAKSFGEKCTKTEKQRVYNRTCQRL 339
N N L NV +VLI N+ + SFG +K R+Y + +R+
Sbjct: 774 NENLLQNV-PGIVLIAMNSLKELYAKQKSSSFGNDAISVDKLRLYRQKARRI 824
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 178 RHGFSLSAFLFINLLIL 128
+HGFSL LFI+L IL
Sbjct: 545 KHGFSLLKILFISLCIL 561
>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 431
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 193 SLTNVWIKMVLITQNARSISKIITPAK 273
++T VWI ++L+T A + +++ P K
Sbjct: 356 TITIVWIILILLTLRAVYVQELLYPGK 382
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 344 LFNLWQVRLYTLCFSVFVH 288
LFNL++ R +TL S+F H
Sbjct: 161 LFNLYEGRWWTLVVSIFSH 179
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 302 SVFVHFSPKLFAGVIIFEILLAFCVIKTIFIQTF--VRLFLFCKTRIQSLGVFIY 144
+VFV F LF G I + F +IK F QT+ V+L T I S+ +
Sbjct: 450 AVFVLFM--LFWGTCIIAATVPFAIIKLYFAQTYSSVKLGFMLGTCIVSVSFLTF 502
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,943,673
Number of Sequences: 5004
Number of extensions: 39695
Number of successful extensions: 126
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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