Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19e19f
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689... 29 2.2
03_05_0723 - 27143559-27143648,27144020-27144192,27144284-271443... 29 2.2
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734... 29 2.2
07_03_1693 - 28756331-28756435,28756558-28756664,28757114-287572... 28 3.9
06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000 28 3.9
01_07_0318 + 42703176-42703473,42703563-42704290 28 5.2
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391... 27 6.8
03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880... 27 6.8
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 27 9.0
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73... 27 9.0
07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207 27 9.0
05_01_0024 - 164618-165139,166884-166949,167046-167216,167321-16... 27 9.0
>07_01_0849 +
6896930-6896996,6897453-6897474,6897615-6897690,
6897775-6897876,6898156-6898304,6898637-6898784
Length = 187
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 222 FDHAKCEEYFEN-YNTCKKFWGKVYKDRKAKGIQPYLPEVEERKEIKAAYFKAVKG 386
F ++KC+ YF N K W +Y+ + K I + + R+ K Y +++ G
Sbjct: 59 FSNSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVK-KRRRTTKKPYSRSIVG 113
>03_05_0723 -
27143559-27143648,27144020-27144192,27144284-27144364,
27144556-27144609,27146556-27146574
Length = 138
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +3
Query: 153 NAERLNPCLTEQEQSYKCLDKNGFDHAKCEEYFENYNTCKK 275
NA + C + C++ G D +KC+ Y + N C++
Sbjct: 93 NATPSDSCSIHSKAFQDCINNYGSDISKCQFYLDMLNECRR 133
>03_03_0210 +
15470680-15470715,15473088-15473342,15473417-15473499,
15473617-15473698,15474886-15474939
Length = 169
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/51 (21%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 174 CLTEQEQSYKCLDKNGFDHAKCEEYFENYNT-CKKFWGKVYKDRKAKGIQP 323
C T + ++C+ G D +C+++ + Y + C W + + +++ G P
Sbjct: 116 CFTRYVEYHRCVAAKGEDAPECDKFAKYYRSLCPGEWVERWNEQRENGTFP 166
>07_03_1693 -
28756331-28756435,28756558-28756664,28757114-28757245,
28757412-28757478,28757553-28757635,28757824-28757905,
28763101-28763177,28763278-28763361,28763443-28763512,
28763625-28763713,28763801-28764487,28765700-28765997
Length = 626
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 174 CLTEQEQSYKCLDKNGFDHAKCEEYFENYNTCK-KFWGKVYKDRKAKGIQ 320
CL+++ Q+ +CL+ NG ++ N+ CK F G+V + A+G++
Sbjct: 406 CLSQEIQTNECLESNG---GCWQDKTNNFTACKDTFRGRVCECPIARGVK 452
>06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000
Length = 461
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 261 NTCKKFWGKVYKDRKAKGIQPYLPEVE 341
N K +W K R G+ PY PE+E
Sbjct: 130 NEIKNYWNTRLKRRVRAGLTPYPPEIE 156
>01_07_0318 + 42703176-42703473,42703563-42704290
Length = 341
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 315 YPLLFCLCTLFPKTFC 268
Y L FC+C LFP T C
Sbjct: 94 YCLTFCMCDLFPGTSC 109
>07_03_1305 -
25638531-25638584,25638909-25638990,25639087-25639169,
25639252-25639515,25639984-25640060,25640183-25640277,
25640953-25641065
Length = 255
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 174 CLTEQEQSYKCLDKNGFDHAKCEEYFENYNT-CKKFWGKVYKDRKAKGIQP 323
C T + ++C+ G +CE++ + Y + C W + + +++ G P
Sbjct: 202 CFTRYIEYHRCVAAKGEGAPECEKFAKYYRSLCPSEWIERWNEQRENGTFP 252
>03_05_0064 -
20385290-20385346,20385452-20387133,20387266-20388083,
20388184-20388303,20389036-20389305,20390094-20390269
Length = 1040
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 216 NGFDHAKCEEYFENYNTCKKFWGKVYKD 299
+ D A+ Y E + TCKK G KD
Sbjct: 252 SAIDKARHRSYMEKFQTCKKHQGTCSKD 279
>12_01_0101 -
779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 174 CLTEQEQSYKCLDKNGFDHAKCEEYFENYNTCK-KFWGKVYKDRKAKGIQ 320
CL+E Q+ +CL+ NG ++ N + CK F G+V + KG++
Sbjct: 412 CLSEDIQTNECLENNG---GCWQDKAANISACKDTFRGRVCECPVVKGVK 458
>11_01_0101 -
738305-738556,738723-738977,739306-739554,739649-739843,
739953-740060,740184-740405,740806-741390,741495-741863,
742423-742529,742755-742883,743027-743084,743166-743248,
744115-744196,744274-744350,744477-744560,744649-744718,
744796-744884,744965-745654,746127-746439
Length = 1338
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 174 CLTEQEQSYKCLDKNGFDHAKCEEYFENYNTCK-KFWGKVYKDRKAKGIQ 320
CL+E Q+ +CL+ NG ++ N + CK F G+V + KG++
Sbjct: 412 CLSEDIQTNECLENNG---GCWQDKAANISACKDTFRGRVCECPVVKGVK 458
>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
Length = 153
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/34 (29%), Positives = 14/34 (41%)
Frame = +3
Query: 168 NPCLTEQEQSYKCLDKNGFDHAKCEEYFENYNTC 269
+PC KCL+ D KC+ + Y C
Sbjct: 71 DPCCDTYSLVMKCLENTKNDFKKCKTLIDKYEEC 104
>05_01_0024 -
164618-165139,166884-166949,167046-167216,167321-167422,
167538-167600,167679-167825,168234-168359,168742-168921,
169183-169322,169688-169861,170096-170123
Length = 572
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = +3
Query: 171 PCLTEQEQSYKCLDKNGFDHAKCEEYFENYNTC 269
PC E+ +C N D KC E + + C
Sbjct: 526 PCTEERSNCRQCYVSNAQDPLKCAEAVKRFEAC 558
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,695,417
Number of Sequences: 37544
Number of extensions: 195722
Number of successful extensions: 426
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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