Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19e18r
(869 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 37 0.004
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 33 0.070
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.28
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 30 0.37
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 30 0.49
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 0.65
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 0.65
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 1.1
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 27 2.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.5
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 4.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.6
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 26 6.1
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 6.1
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 26 6.1
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 26 6.1
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual 26 6.1
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 8.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 8.0
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ... 26 8.0
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 26 8.0
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 26 8.0
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 36.7 bits (81), Expect = 0.004
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Frame = +3
Query: 156 TIVTNSGGVQFVGSTVRAGTNSATRLGVSATVGVKVTMSNAVKNTEKTTVGVDCLHISSC 335
T TN F TV + T+S++ ++A GV ++ N E T+ + +
Sbjct: 806 TSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSL-NLESTSSVTSTAYTTDS 864
Query: 336 VTVQGLVVTTPPGPSRIQTGNPVGSATSLSSS--VTDNVRAQAEANQVDSTPIAASVVD 506
VT T GPS + + S TSLS+S VT +V + +++ + S D
Sbjct: 865 VT--STTALTSQGPSSSVVSSSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTD 921
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -2
Query: 619 TATLLLWTGVVLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST*LASAWARTL 440
+AT WT + T+ + + SS A+ WS SS + + +T +++ T
Sbjct: 922 SATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATA 981
Query: 439 SVT 431
SV+
Sbjct: 982 SVS 984
Score = 26.2 bits (55), Expect = 6.1
Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Frame = +3
Query: 138 T*SANETIVTNSGGVQFVGSTVRAGTNSATRLG--VSATVGVKVTMSNAVKNTEKTTVGV 311
T S + +V+ GS+ T+S+T +S+ + ++ S+++ + +
Sbjct: 496 TLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSS 555
Query: 312 DCLHISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIA 491
ISS ++ + T S + + S+TSLS S + + A+ + I+
Sbjct: 556 SITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSIS 615
Query: 492 ASV 500
+S+
Sbjct: 616 SSI 618
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 32.7 bits (71), Expect = 0.070
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Frame = +3
Query: 363 TPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSD 542
TP S + + S+T +SSS+T ++ + A ++ S+ ++ + D AK +S
Sbjct: 148 TPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSAD---AKTVSA 204
Query: 543 TGNS-IDG-SVV*TVGKTTPVHNNNVAVGDGQQGGADHGVHSGVSVA 677
+ NS I G S T ++ N++ + G +GV + +SVA
Sbjct: 205 SSNSTISGFSTSTTSASSSAAGNSSSSSYTSYSGAVSNGV-AQLSVA 250
Score = 31.1 bits (67), Expect = 0.21
Identities = 16/80 (20%), Positives = 35/80 (43%)
Frame = +3
Query: 384 IQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNSIDG 563
I + S +S +++ + + + ++ STPI++S+ + +S + S G
Sbjct: 133 IYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSG 192
Query: 564 SVV*TVGKTTPVHNNNVAVG 623
S+ KT +N+ G
Sbjct: 193 SISSADAKTVSASSNSTISG 212
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.28
Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Frame = +1
Query: 331 PALRFRAWLLPPHLGPAG---SKPV-TLLGLPPACRPALPTTCAPKLKPIKWTRPQLPPP 498
PA+ R+ P LG A + PV T LPP+ P+LP + P L P LPP
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS 452
Query: 499 LLMSQTKKLPRNCPTL-GTPLTAVLYRPLARPRQSTTITLQSETASKAGR 645
++ LP P P A P P + + +E + GR
Sbjct: 453 APIA--PPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQQDGR 500
Score = 29.1 bits (62), Expect = 0.86
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Frame = +1
Query: 361 PPHLGPA-GSKPVTL-----LGLPPACRPALPTTCAPKLKPI----KWTRPQL--PPPLL 504
PP P+ G +P L + PPA PA+P AP L P+ + + P + PP L
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424
Query: 505 MSQTKKLPRNCPTLGTPLTAVLYRPL 582
S LP + P P+ A PL
Sbjct: 425 PSAPPSLPPSAPP-SLPMGAPAAPPL 449
Score = 26.6 bits (56), Expect = 4.6
Identities = 25/63 (39%), Positives = 29/63 (46%)
Frame = +1
Query: 265 P*AMRSKIPRRPPSVWIAST*APALRFRAWLLPPHLGPAGSKPVTLLGLPPACRPALPTT 444
P A S P PPS+ + + AP L A + PP PAG LPPA PA P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL--PAGMPAAP--PLPPAA-PAPPPA 479
Query: 445 CAP 453
AP
Sbjct: 480 PAP 482
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 30.3 bits (65), Expect = 0.37
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Frame = +3
Query: 114 VLSLIEVVT*SANETIVTNSGGVQFVGSTVRAGTNSAT-RLGVSATVGVKVTMSNAVKNT 290
V +EVV +A T + G QF +T+ + S + + V G VT S +
Sbjct: 890 VTGTVEVVEPAAGTVTGTLTSGSQFFTTTIAQASGSVSGNVEVIEPSGSTVT-STIYSGS 948
Query: 291 EKTTVGVDCLHISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSS 431
E T L + S T+ G V P P+ I TG + T SSS
Sbjct: 949 ESFTT---TLAVGSG-TIPGTVEVILPAPTTIYTGTVATTITYSSSS 991
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 29.9 bits (64), Expect = 0.49
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 342 VQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPD-Q 518
V G TTP + + + S SLSS+ TDN+ A V T +AASV D
Sbjct: 146 VYGDSATTPAASEAQASSDILSSLASLSSASTDNLAA-----SVTPTTVAASVASSVDTD 200
Query: 519 KVAKELSDTGNSIDGSV 569
+ +S +S SV
Sbjct: 201 SASATISSVVDSATSSV 217
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 29.5 bits (63), Expect = 0.65
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 409 LPPACRPALPTTCAPKLKPIKWTRPQLPPP 498
L P+ P LP + +L P+ TRPQ+P P
Sbjct: 1046 LSPSVTPQLPPVSS-RLPPVSATRPQIPQP 1074
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.5 bits (63), Expect = 0.65
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 328 APALRFRAWLLPPHLGPAGSKPVTLLGLPPACR-PALPTTCAPKLKPIKWTRPQLP-PPL 501
APAL LPP P V L P+ P +P T AP L P + P +P PP+
Sbjct: 450 APALSMNPSSLPPWQQPTQQSAVQPSNLVPSQNAPFIPGTSAP-LPPTTFAPPGVPLPPI 508
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 1.1
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 2/145 (1%)
Frame = +3
Query: 78 ITHVEGTSRALIVLSLIEVVT*SANETIVTNSGGVQFVGSTVRAGTN-SATRLGVSATVG 254
IT T+ +I T S + T S ++ T+ S G S+++
Sbjct: 72 ITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLS 131
Query: 255 VKVTMSNAVKNTEKTTVGVDCLHISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSSV 434
+T + +T T++ + SS T + TT + + P G ++SLS+ +
Sbjct: 132 TPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPI 191
Query: 435 TDNV-RAQAEANQVDSTPIAASVVD 506
T V + + P + S D
Sbjct: 192 TPTVPPTSTSSTSIPIPPTSTSSTD 216
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.5 bits (58), Expect = 2.6
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = +3
Query: 408 SATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNSIDGSVV*TVGK 587
S TS+SSS ++N + +VDS P + V D K KE S+ G S T+
Sbjct: 368 STTSISSSPSENSDTSDDLTKVDS-PNKSLVNDNVSAKHDKE-SENGKSKFPPPSQTLVT 425
Query: 588 TTPVH--NNNVAVGDGQQGGADHGVHSGVSVAVPAVDNNKERQVSIVVRVPDR 740
T+ + N + G + +D S SV + + +++ S+ + +R
Sbjct: 426 TSTISAAGNEPSDEIGSENDSDSDSDSDSSVPLSQLQKKSQQRNSVSHEIQNR 478
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.6
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +1
Query: 361 PPHLGPAGSKPVTLLGLPPACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQTKKLPRNCP 540
PP P+G+ PV + PA + P KP P +PPP S+ +P+ P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGV-PPVPPP---SEAPPVPK--P 1203
Query: 541 TLGTP 555
++G P
Sbjct: 1204 SVGVP 1208
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 3.5
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Frame = +3
Query: 147 ANETIVTNSGGVQFVGSTVRAG-TNSATRLGVSATVGVK-VTMSNAVKNTEKTTVGVDCL 320
A+ + ++S ST A T+SAT +S+T T S+ ++ +T
Sbjct: 150 ASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATAT 209
Query: 321 HISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAAS 497
S T T+ S + N SAT+ SSS++ V + +ST A S
Sbjct: 210 SSSLSSTAASNSATSSSLAS--SSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATS 266
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 684 AVDNNKERQVSIVVRVPDRVDIAICNNLMVVLVTSG 791
A+ + E +++VVRV R D + +N + + TSG
Sbjct: 64 ALHDENETNINVVVRVRGRTDQEVRDNSSLAVSTSG 99
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +1
Query: 361 PPHLGPAGSK-PVTLLGLPPACRPALPTTCAPKLKPIKWTRPQLPP 495
P P SK P LPP +PA P P + P +PP
Sbjct: 154 PASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 6.1
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = -3
Query: 861 LEEPAEGRHPYVKERCKQPIL---AFHQT*PKQPSSYYKWQCQLYPELELQWKPASLCYC 691
LEE A + P+ +E ++P+L A + QP+S +LYP PAS
Sbjct: 210 LEEGA--KPPFPRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSS 267
Query: 690 PRLEQQ 673
P L Q
Sbjct: 268 PLLSSQ 273
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -2
Query: 589 VLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST 470
VLPT T S VS SSL++F ST G +T
Sbjct: 244 VLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTT 283
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 847 RGKTSLCQGTVQTTNTGFSPDVTKTTI 767
RG C+ T + N GF+PD+ K +
Sbjct: 368 RGFAIQCRVTTEDPNNGFAPDIGKIEV 394
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -1
Query: 800 WLFTRRNQNNHQVITNGNVNS--IRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRPALLA 627
W+FT ++N QV NG + S +N + PL +G S+G+ + + LL
Sbjct: 425 WVFTSDDRNLAQVWVNGRLVSGFEMKANLKNSTPL---TNGVTSSGHQVFKELTQAHLLP 481
Query: 626 VSDC 615
+ C
Sbjct: 482 RTQC 485
>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 214 VPALTVEPTNCTPPLFVTIVSLAD 143
+PAL ++P+ CTP SL D
Sbjct: 74 MPALRLKPSQCTPLFLAVYTSLRD 97
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 8.0
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +1
Query: 385 SKPVTLLGLPPACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQTKKLPRNCPTLGTPLTA 564
S PV LL P+LP PK+K + P S + P +G+P TA
Sbjct: 321 SSPVPLLAKKREGSPSLPIPILPKMKDTSIPAAE-PASSTTSARDQTPSTPKDVGSPSTA 379
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 376 PAGSKPVTLLGLPPACRPALPTTCAPKLK-PIKWTRPQLPPP 498
P S P +++ PP+ +P P+ AP P + P PPP
Sbjct: 156 PTVSAPNSMVSPPPSFQP--PSAAAPATSLPSDYNPPPPPPP 195
Score = 25.8 bits (54), Expect = 8.0
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Frame = +1
Query: 418 ACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQ---TKKLP---RNCPTLGTPLTAVLYRP 579
A P +P T PK P PPP L Q T +LP RN LG+ + + P
Sbjct: 218 AVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVN--IPPP 275
Query: 580 LARPRQSTTITLQSETAS 633
A P Q + T S
Sbjct: 276 PATPSQPPRPPTNASTRS 293
>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 201
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +3
Query: 165 TNSGGVQFVGSTVRAGTNSATRLGVSATVGVKVTMSNAVKNTEKTTVGVDCLHISSCVTV 344
TN+ ++ GS + + N +R+G++ + + KNT D SS V
Sbjct: 109 TNAAAIELTGSPIPSFLNRISRIGLAFPTITNALLQHGQKNTSDVD---DSSDSSSDVDE 165
Query: 345 QGLVVT 362
+ L+V+
Sbjct: 166 ETLIVS 171
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 217 LVPALTVEPTNCTPPLFVTIVSLADYVTTSIRLRTIS 107
L+P++T C PP+FV IV ++ + + L IS
Sbjct: 270 LLPSVTFWQNICYPPIFVKIVDVSLKILFNWDLSNIS 306
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 208 ALTVEPTNCTPPLFVTIVSLADYVTTSI 125
AL+ PTNC ++ VSL Y+T+++
Sbjct: 678 ALSKFPTNCLRSVYSHTVSLMKYLTSAV 705
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,982,519
Number of Sequences: 5004
Number of extensions: 92151
Number of successful extensions: 338
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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