Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19e13r
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    27   2.1  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         27   2.8  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.8  

>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +3

Query: 93  IFFFIKLYHLPYRSLLFSYDIFLYETKGTVKINIQL*IARIMN 221
           I FF++LY+    S +  YD+     +   ++N+++ +  ++N
Sbjct: 371 IVFFVELYNFQLVSCVLVYDLIRLFLRSLTELNVEMLLKIVLN 413


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 21  ASRKCKNYVSCLHFVIVDFIFVYTIFFFIKLYHLPYR 131
           A  + KN  S LHF  + ++  + +FF I LY   +R
Sbjct: 64  AKTEFKNSFSNLHFFFLFWLLNFILFFRIHLYSCNFR 100


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/47 (25%), Positives = 30/47 (63%)
 Frame = -1

Query: 698 REHREQHLRNSKQLRHLARRQIHGEQPQETTQKVQEAVKFIYKTLPN 558
           +E ++ +L+N K+  +   +++ GE+  E +Q+V +A+   +K+ P+
Sbjct: 53  KEIKKGNLKNKKKKDYGKIQRLPGERLSEFSQRVNKAIPVSFKSGPS 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,383
Number of Sequences: 5004
Number of extensions: 56530
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)