Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19e13r
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0015 + 14116129-14116691,14116810-14117128,14117588-141186...    29   2.9  
03_05_0829 + 28025760-28025846,28026366-28026473,28026721-280267...    28   9.0  

>10_08_0015 +
           14116129-14116691,14116810-14117128,14117588-14118664,
           14118754-14119056
          Length = 753

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -1

Query: 698 REHREQHLRNSKQLRHLARRQIHGEQPQETTQKVQEAVKFIYKTLPNHTI*YNNS 534
           REHR Q L+  + +   A+RQ+  E+ ++  +KV   +  I K L  H + +  S
Sbjct: 182 REHRYQRLQKDQTIDKAAQRQL--EKEKDHWRKVLLRILVIVKFLAKHNLAFRGS 234


>03_05_0829 +
           28025760-28025846,28026366-28026473,28026721-28026752,
           28026823-28026873,28027528-28027589,28027663-28027924,
           28028634-28028899,28029138-28029232,28029772-28029948
          Length = 379

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 39  NYVSCLHFVI-VDFIFVYTIFFFIKLYHLPYRSLLFSYDIFLYETKGTVKINIQL 200
           N ++ L+++    FIF++  +F ++   +    + F+Y IF +       +NI +
Sbjct: 189 NPITSLYYIAPCSFIFLFVPWFLLEKPEMDVSQIQFNYWIFFFNAVAAFALNISI 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,483,341
Number of Sequences: 37544
Number of extensions: 298229
Number of successful extensions: 605
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)