Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19e13r
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77135-1|CAB00876.1|  362|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine rece...    28   6.0  

>Z77135-1|CAB00876.1|  362|Caenorhabditis elegans Hypothetical
           protein T16A9.2 protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +3

Query: 111 LYHLPYRSLLFSYDI-FLYETKGTVKINIQL*IARIMNSKTKLFYYRNFNKNLLGVFFIT 287
           +Y + +  L  S+ I  ++  KG  ++     IA   +S +K    + F   ++      
Sbjct: 201 IYGISFMMLSTSFSITIIFAAKGYFEVKKLSSIATSHSSASKTLQAQLFYSLVIQTVIPV 260

Query: 288 IIAH*VCARFLLNIFFSIGR 347
           I+ H      L+N FF IGR
Sbjct: 261 ILIHFPTTIILINAFFGIGR 280


>U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein19 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 63  VIVDFIF-VYTIFFFIKLYHLPYRSLLFSYDIFLYET--KGTVKINIQL*IARIMN-SKT 230
           VI +F   VY IFF +   H PY  +LF     L      GT++  I   I  I     T
Sbjct: 52  VIENFALDVYLIFFLVPAVHSPY--ILFRGTGLLSHLGFSGTIQFLITCLIVNIHTLYMT 109

Query: 231 KLFYYR 248
           ++FYYR
Sbjct: 110 EIFYYR 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,457,243
Number of Sequences: 27780
Number of extensions: 314396
Number of successful extensions: 766
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)