Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19e12r
(822 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces... 251 1e-67
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 148 1e-36
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 87 3e-18
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 33 0.049
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 30 0.46
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 25 0.72
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 29 1.1
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 29 1.1
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 29 1.1
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 27 2.4
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 3.2
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 27 4.3
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 4.3
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 27 4.3
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 4.3
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 26 5.6
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 26 7.4
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 26 7.4
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 7.4
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 25 9.8
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 9.8
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 25 9.8
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 25 9.8
>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 276
Score = 251 bits (614), Expect = 1e-67
Identities = 117/262 (44%), Positives = 180/262 (68%), Gaps = 5/262 (1%)
Frame = -3
Query: 793 GPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDEEL 614
G A SGKST+C ++ + R +VNLDPAAE+F++EP VDIR+LI +DD ME EL
Sbjct: 10 GVASSGKSTFCGALMSYMKSVGRSCHLVNLDPAAENFEWEPTVDIRDLISIDDVME--EL 67
Query: 613 QFGPNGGLVFCIETLLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPVMRRLVDLLQ- 437
+GPNGGL++C E L+EN DWL E++GD D+DY++FD PGQIELYTH+P++ L+ LQ
Sbjct: 68 DYGPNGGLIYCFEFLMENLDWLNEEIGDYDEDYLIFDMPGQIELYTHVPILPALIRHLQV 127
Query: 436 NWNFRICVVFLVDSQFMIDGAKFLSGTMAALSVMVNLELPHVNVLTKMDLL---SKTARK 266
NFR C V+L++SQF++D KF +G ++A+S MV +E+PH+N+L+KMDLL + +
Sbjct: 128 TLNFRPCAVYLLESQFLVDRTKFFAGVLSAMSAMVMMEVPHINLLSKMDLLKDNNNITKA 187
Query: 265 QIDNYLDPDPHVLLSDM-RNAHSKWHEKYAKLTEAIGEVVENFSLVRFYPLNIRDEESIE 89
++ +L+ DP +L ++ + K+HE L I +++++F++V F PL +EES+
Sbjct: 188 ELKRFLNTDPLLLTGEINETTNPKFHE----LNRCIVQLIDDFNMVNFLPLESGNEESVS 243
Query: 88 NIMLTVDNIIQYGEDADVKIKD 23
++ +D+ Q+ ED + K D
Sbjct: 244 RVLSYIDDATQWYEDQEPKDPD 265
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 148 bits (358), Expect = 1e-36
Identities = 80/247 (32%), Positives = 147/247 (59%), Gaps = 3/247 (1%)
Frame = -3
Query: 799 LVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDE 620
+VGP GSGKSTYC + + R +VNLDPA + Y +DIR+++ ++ +D
Sbjct: 7 VVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNLDPANDFIKYPCAIDIRKVLDVEMIQKDY 66
Query: 619 ELQFGPNGGLVFCIETLLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPVMRRLVDLL 440
+L GPNG L++ +E + + +WL ++L D Y++FDCPGQ+EL+T+ +++++ L
Sbjct: 67 DL--GPNGALIYAMEAIEYHVEWLLKELKKHRDSYVIFDCPGQVELFTNHNSLQKIIKTL 124
Query: 439 Q-NWNFRICVVFLVDSQFMIDGAKFLSGTMAALSVMVNLELPHVNVLTKMDLLSK--TAR 269
+ ++R V LVD+ + + ++S + L M+ L++PHVN+L+K DLL T
Sbjct: 125 EKELDYRPVSVQLVDAYCCTNPSAYVSALLVCLKGMLQLDMPHVNILSKADLLCTYGTLP 184
Query: 268 KQIDNYLDPDPHVLLSDMRNAHSKWHEKYAKLTEAIGEVVENFSLVRFYPLNIRDEESIE 89
++D + + L+ + + K ++Y+ L +AI E+VE+F+LV F + + ++ S+
Sbjct: 185 MKLDFFTEVQDLSYLAPLLD-RDKRLQRYSDLNKAICELVEDFNLVSFEVVAVENKASML 243
Query: 88 NIMLTVD 68
++ +D
Sbjct: 244 RVLRKID 250
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 87.0 bits (206), Expect = 3e-18
Identities = 56/188 (29%), Positives = 100/188 (53%), Gaps = 5/188 (2%)
Frame = -3
Query: 799 LVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDE 620
+VG AGSGK+T+ + H + ++NLDPA + YE +DIR+ I+ + M+
Sbjct: 13 VVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEANIDIRDTINYKEVMKQY 72
Query: 619 ELQFGPNGGLVFCIETLLENSDW----LEEQLGDVDDDYILFDCPGQIELYTHLPVMRRL 452
L GPNGG++ + + D LE++ V D+IL D PGQIE++ +
Sbjct: 73 NL--GPNGGIMTSLNLFVTKFDQVLKILEKRAPTV--DHILIDTPGQIEIFQWSASGSII 128
Query: 451 VDLLQNWNFRICVVFLVDSQFMIDGAKFLSGTMAALSVMVNLELPHVNVLTKMDLL-SKT 275
D L + ++ C+ ++VD+ + ++S + A S++ +LP + V K D+ S+
Sbjct: 129 CDTLAS-SWPTCIAYVVDTPRATSTSTWMSSMLYACSMLYKAKLPLIIVYNKCDVQDSEF 187
Query: 274 ARKQIDNY 251
A+K + ++
Sbjct: 188 AKKWMTDF 195
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 33.1 bits (72), Expect = 0.049
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -3
Query: 799 LVGPAGSGKSTYCSTIVK-HAMDSKRIVD 716
+VGP+GSGKST +T+ H MDSK +D
Sbjct: 37 VVGPSGSGKSTLINTLFSAHLMDSKGRLD 65
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 29.9 bits (64), Expect = 0.46
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 481 YTHLPVMRRLVDLLQNWNFRICVV 410
Y HL V +R+ D+LQ W C V
Sbjct: 187 YAHLTVSKRMKDVLQTWGMNPCYV 210
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.4 bits (53), Expect(2) = 0.72
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = -3
Query: 559 SDWLEEQLGDVDDDYILFDCPGQIELYTHLPVMR 458
S W +L + Y+ FDC + Y+ + V R
Sbjct: 63 SSWFNSKLSKLSAGYLQFDCQNDGKCYSVIAVHR 96
Score = 22.2 bits (45), Expect(2) = 0.72
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = -3
Query: 457 RLVDLLQN--WNFRICVVFLVDSQFMIDGAKFLSGTMAALSVMVNLELPHVNVLTKMDLL 284
R+ +QN W F+I + F++ KFLS +SVM + ++ +D
Sbjct: 120 RVAIKIQNGLWPFKIVLWFVLGIFSFFIPTKFLSFWGNIISVMGSALFIVYGLMLLVDFA 179
Query: 283 SKTARKQIDNYLDPD 239
A + +D L D
Sbjct: 180 HTWAERCVDRVLTSD 194
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 793 GPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDP 698
GP GSGKS++ I + R + ++LDP
Sbjct: 338 GPKGSGKSSFSRYITNRLLQQYRHIAYLDLDP 369
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 28.7 bits (61), Expect = 1.1
Identities = 9/19 (47%), Positives = 17/19 (89%)
Frame = -3
Query: 799 LVGPAGSGKSTYCSTIVKH 743
++GP+GSGKST+ S ++++
Sbjct: 467 IIGPSGSGKSTFISLLLRY 485
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -3
Query: 406 LVDSQFMIDGAKFLSGTMAALSVMVNL-ELPHVNVLTKMDLLSKTARKQIDNYLDPDPHV 230
L SQ + +S + ++S ++ L ++ + + TK + K RK +++ DP+
Sbjct: 8 LTKSQELFGQISKISHSKISISELITLLDIHYSELFTKNPWMKKEVRKLASEFVENDPNH 67
Query: 229 LLSDMRNAH 203
LLS H
Sbjct: 68 LLSKQDACH 76
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 799 LVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDP 698
L+GP GK++ + +A+ R VNLDP
Sbjct: 111 LIGPRSCGKTSVLKILESYALKQSRHPICVNLDP 144
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 571 LLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPV 464
L++N D + G+++DD I+F P ++ Y H+ V
Sbjct: 380 LVQNKDMEVDDGGEIEDDAIVFSVPPTLQEY-HVSV 414
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 799 LVGPAGSGKSTYCSTIVK--HAMDSKRIVDVVNLDPAAEHFDYEPL 668
L G GSGKST C+ + K + IV ++ +D H+ E L
Sbjct: 34 LAGGPGSGKSTLCAILAKAWNERFGSEIVKIIPMD--GFHYSLEEL 77
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 799 LVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLD 701
+VG GSGKST T+++ M V+V +D
Sbjct: 1212 IVGRTGSGKSTMGLTLLRFTMIMSGAVEVDGID 1244
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 538 VAPLTSQNSLRGSLYKTLDHHLVQIAIPHLP*HHQG 645
+ P +NSL S ++ HH PHLP +HQG
Sbjct: 146 IDPFEVKNSLHDSTDLSITHH------PHLPINHQG 175
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.6 bits (56), Expect = 4.3
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 8/148 (5%)
Frame = -3
Query: 799 LVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDP---AAEHFDYEPLVDI--RELIHLDD 635
L+ P GSGKST I + + +D LD E E ++DI +E HL+
Sbjct: 306 LIAPNGSGKSTLLHAIACGLIPTPSSLDFYLLDREYIPNELTCVEAVLDINEQERKHLEA 365
Query: 634 AMEDEELQFGPNGGLVFCIETLLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPVMRR 455
MED L P+ V ++T+ LE + + D+ ++ ++ +T + +R
Sbjct: 366 MMED--LLDDPDKNAVE-LDTIQTRLTDLETE----NSDHRVYKILRGLQ-FTDEMIAKR 417
Query: 454 LVDLLQNWNFRIC---VVFLVDSQFMID 380
+L W RI ++F+ + M+D
Sbjct: 418 TNELSGGWRMRIALARILFIKPTLMMLD 445
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 799 LVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFD 680
L+G GSGKST+ ++ ++ +D L+ AE D
Sbjct: 106 LLGDNGSGKSTFLESVAARDVEYPEHIDSYLLNAEAEPSD 145
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = -3
Query: 751 VKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDEELQ 611
+ + ++ K I + +L PA +PL+ +++ +A EDE+LQ
Sbjct: 63 IANVLEPKLIDNQYSLIPALPSARTDPLLSQLNSLNIQNATEDEKLQ 109
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = -3
Query: 799 LVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLD 701
+ GP+GSGK++ IVK A++ +V +++LD
Sbjct: 26 IAGPSGSGKTSVAQLIVK-ALNLPHVV-ILSLD 56
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 7.4
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = -3
Query: 799 LVGPAGSGKSTYCSTIV-KHAMDSKRIVDVVNLDPAAEHFDYEPLVDI-REL-IHLDDAM 629
+VGP GSGKS I+ + A + VV L+ + D L +I R+L I L+
Sbjct: 580 IVGPRGSGKSVLVDDILSRAAQEINEKSYVVRLNGTYQTDDKLALREISRQLSIELESIE 639
Query: 628 EDEELQ 611
DE L+
Sbjct: 640 SDEALK 645
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 799 LVGPAGSGKSTYCSTIVKH 743
+VG GSGK+T CS + H
Sbjct: 106 MVGLQGSGKTTTCSKLALH 124
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 32 FNICIFAILYNIVYSQHNIFYALFISYVQWIESN*TEIFHHFSNCFSQFGILFMPF 199
F I I +++Y +HN Y + + QW++ ++ H F GI+F+ F
Sbjct: 1184 FGSKIDTISKHLLYLKHNELYPKVVVFSQWLDV--LDVLH---KSFEANGIVFIRF 1234
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 799 LVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAA 692
L GP+G+GKS VK+ D ++ V +D A+
Sbjct: 14 LAGPSGTGKSCLLQRFVKNQWDD-QVSHTVGIDFAS 48
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 9.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 778 GKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIR 656
G +C + +SK ++ + NL A DY PL DIR
Sbjct: 359 GTLPFCRRYLDRIGESKYLLALNNLVSAGIVQDYPPLCDIR 399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,501,160
Number of Sequences: 5004
Number of extensions: 74471
Number of successful extensions: 262
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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