Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19e12r
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0911 + 28697654-28697698,28698170-28698278,28698352-286984... 293 8e-80
03_02_0933 - 12505196-12505286,12505759-12505814,12508780-125088... 243 1e-64
02_04_0215 - 20983210-20983293,20983440-20983512,20984072-209841... 116 2e-26
03_02_0781 + 11141469-11141486,11141855-11141978,11142024-111423... 74 1e-13
11_03_0011 + 8934346-8934398,8936014-8936198,8936334-8936425,893... 29 3.4
02_02_0411 - 9928175-9928187,9928385-9928575,9929044-9929126,992... 29 3.4
07_01_0789 - 6150257-6151046,6151167-6151390,6151816-6151991,615... 29 4.5
02_04_0271 + 21445113-21445865,21446727-21446788,21446927-214470... 29 4.5
07_03_1728 + 29076733-29079069 29 5.9
07_03_1324 - 25825153-25825197,25825705-25825785,25825907-258259... 29 5.9
02_05_0942 + 32970537-32970581,32971059-32971113,32971300-329714... 29 5.9
06_01_0718 + 5233030-5233062,5233329-5233383,5233543-5233660,523... 28 7.8
01_06_0849 + 32433429-32433743,32433840-32434021,32434235-324343... 28 7.8
>03_05_0911 +
28697654-28697698,28698170-28698278,28698352-28698433,
28698486-28698514,28699472-28699567,28699860-28699963,
28700071-28700201,28700276-28700369,28701666-28701721,
28702728-28702821
Length = 279
Score = 293 bits (720), Expect = 8e-80
Identities = 142/276 (51%), Positives = 200/276 (72%), Gaps = 15/276 (5%)
Frame = -3
Query: 799 LVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDE 620
++GPAGSGKSTYCS++ +H R + +VNLDPAAEHF Y DIRELI LDD ME
Sbjct: 7 VIGPAGSGKSTYCSSLYQHCETVGRTIHMVNLDPAAEHFSYPVSTDIRELISLDDVME-- 64
Query: 619 ELQFGPNGGLVFCIETL------------LENS--DWLEEQL-GDVDDDYILFDCPGQIE 485
EL GPNGGL++C+E L LE++ DWL+EQL G +DDDY++FDCPGQIE
Sbjct: 65 ELGMGPNGGLIYCMELLKLLTDPSENHRHLEDNLDDWLDEQLEGYLDDDYLVFDCPGQIE 124
Query: 484 LYTHLPVMRRLVDLLQNWNFRICVVFLVDSQFMIDGAKFLSGTMAALSVMVNLELPHVNV 305
L+TH+PV+R V+ L+ NF +C V+L+DSQF+ D K++SG MA+LS M+ LELPH+N+
Sbjct: 125 LFTHVPVLRNFVEHLKRKNFNVCAVYLLDSQFVSDVTKYISGCMASLSAMIQLELPHINI 184
Query: 304 LTKMDLLSKTARKQIDNYLDPDPHVLLSDMRNAHSKWHEKYAKLTEAIGEVVENFSLVRF 125
L+KMDL+S +K ++ YL+P+ VLLS + + + + KL +++ E+V+++S+V F
Sbjct: 185 LSKMDLVSN--KKDVEEYLNPEAQVLLSQL---NRQMAPNFGKLNKSLAELVDDYSMVNF 239
Query: 124 YPLNIRDEESIENIMLTVDNIIQYGEDADVKIKDFD 17
PL++R E SI+ ++ +DN IQYGEDADVK++DFD
Sbjct: 240 IPLDLRKESSIQYVLSHIDNCIQYGEDADVKVRDFD 275
>03_02_0933 -
12505196-12505286,12505759-12505814,12508780-12508873,
12508949-12509079,12509187-12509290,12509585-12509680,
12510752-12510860,12511252-12511296
Length = 241
Score = 243 bits (595), Expect = 1e-64
Identities = 120/262 (45%), Positives = 177/262 (67%), Gaps = 1/262 (0%)
Frame = -3
Query: 799 LVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDE 620
++GPAGSGKSTYCS++ +H R + +VNLDPAAEHF Y V HL+D ++D
Sbjct: 7 VIGPAGSGKSTYCSSLYQHCETVGRTIHMVNLDPAAEHFSYP--VSTENHRHLEDNLDD- 63
Query: 619 ELQFGPNGGLVFCIETLLENSDWLEEQL-GDVDDDYILFDCPGQIELYTHLPVMRRLVDL 443
WL+EQL G +DDDY++FDCPGQIEL+TH+PV+R V+
Sbjct: 64 ----------------------WLDEQLDGYLDDDYLVFDCPGQIELFTHVPVLRNFVEH 101
Query: 442 LQNWNFRICVVFLVDSQFMIDGAKFLSGTMAALSVMVNLELPHVNVLTKMDLLSKTARKQ 263
L+ NF +C V+ +DSQF+ D K++SG MA+LS M+ LELPH+N+L+KMDL++ +K
Sbjct: 102 LKRKNFNVCAVYFLDSQFVSDVTKYISGCMASLSAMIQLELPHINILSKMDLVAN--KKD 159
Query: 262 IDNYLDPDPHVLLSDMRNAHSKWHEKYAKLTEAIGEVVENFSLVRFYPLNIRDEESIENI 83
++ YL+P+ VLLS + + + K+ KL +++ E+V+++S+V F PL++R E SI+ +
Sbjct: 160 VEEYLNPEAQVLLSQL---NRQMAPKFGKLNKSLAELVDDYSMVNFIPLDLRKESSIQYV 216
Query: 82 MLTVDNIIQYGEDADVKIKDFD 17
+ +DN IQYG DADVK++DFD
Sbjct: 217 LSHIDNCIQYGVDADVKVRDFD 238
>02_04_0215 -
20983210-20983293,20983440-20983512,20984072-20984159,
20984232-20984388,20984472-20984575,20985045-20985119,
20985144-20985213
Length = 216
Score = 116 bits (280), Expect = 2e-26
Identities = 62/177 (35%), Positives = 105/177 (59%), Gaps = 4/177 (2%)
Frame = -3
Query: 595 GLVFCIETLLENSDWLEEQLGD-VDDDYILFDCPGQIELY-THLPVMRRLVDLLQNWNFR 422
GLV+C++ L +N DWLEE+L ++D Y+LFD PGQ+EL+ H + L++ N R
Sbjct: 24 GLVYCMDYLEKNIDWLEEKLKPLIEDHYLLFDFPGQVELFFLHSNARSIIYKLIKKLNLR 83
Query: 421 ICVVFLVDSQFMIDGAKFLSGTMAALSVMVNLELPHVNVLTKMDLLSKTARK--QIDNYL 248
+ V L+D+ D K++S + +LS M+++ELPH+NVL+K+DL+ ++ Y
Sbjct: 84 LTAVHLIDAHLCCDPGKYVSALLLSLSTMLHMELPHINVLSKIDLIENYGNLAFNLNFYT 143
Query: 247 DPDPHVLLSDMRNAHSKWHEKYAKLTEAIGEVVENFSLVRFYPLNIRDEESIENIML 77
D + L + + KY KLT+ + +V+++F LV F L+I+ S+ ++ L
Sbjct: 144 DVEDLSYLQRHLDQDPR-SAKYRKLTKELCDVIDDFGLVNFTTLDIQTAVSLSSVKL 199
>03_02_0781 +
11141469-11141486,11141855-11141978,11142024-11142340,
11143219-11143509,11143751-11143956,11144048-11144327
Length = 411
Score = 74.1 bits (174), Expect = 1e-13
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = -3
Query: 784 GSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDEELQFG 605
G+GK+T+ +V H S V+NLDPA + +DIR+ + + M +E G
Sbjct: 78 GTGKTTFMHRLVCHTQASNMRGYVLNLDPAVMTLPFGANIDIRDTVRYKEVM--KEYGLG 135
Query: 604 PNGGLVFCIETLLENSDWLEEQLGDVDD--DYILFDCPGQIELYTHLPVMRRLVDLLQNW 431
PNGG++ + D + + D DY+L D PGQIE++T + + +
Sbjct: 136 PNGGILTSLNLFSTKFDEVISVIERRADQLDYVLVDTPGQIEIFTWSASGAIITEAFAS- 194
Query: 430 NFRICVVFLVDSQFMIDGAKFLSGTMAALSVMVNLELPHVNVLTKMDL 287
F V ++VD+ F+S + A S++ LP + K+D+
Sbjct: 195 TFPTVVAYVVDTPRSTSPVTFMSNMLYACSILYKTRLPMILTFNKVDV 242
>11_03_0011 +
8934346-8934398,8936014-8936198,8936334-8936425,
8937699-8937768,8937856-8937971,8939050-8939146,
8939965-8940044,8940198-8940392,8940548-8940631,
8940709-8940769,8941530-8941590,8942023-8942116,
8942188-8942260,8942573-8942655,8943241-8943431,
8943563-8943572
Length = 514
Score = 29.5 bits (63), Expect = 3.4
Identities = 28/77 (36%), Positives = 36/77 (46%)
Frame = -3
Query: 799 LVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDE 620
+ G A SGKST C I+ D +R+V V E F Y L D EL+H+ D D
Sbjct: 81 VAGGASSGKSTVCKMIIDQLRD-QRVVVVTQ-----ESF-YYGLSD-EELVHVHDYNFDH 132
Query: 619 ELQFGPNGGLVFCIETL 569
F L+ C+E L
Sbjct: 133 PDAFDTE-LLLSCMENL 148
>02_02_0411 -
9928175-9928187,9928385-9928575,9929044-9929126,
9929444-9929516,9929588-9929681,9930100-9930160,
9930824-9930884,9930963-9931046,9931196-9931390,
9931526-9931605,9932595-9932691,9934198-9934313,
9934407-9934476,9935439-9935530,9935661-9935823
Length = 490
Score = 29.5 bits (63), Expect = 3.4
Identities = 28/77 (36%), Positives = 36/77 (46%)
Frame = -3
Query: 799 LVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDE 620
+ G A SGKST C I+ D +R+V V E F Y L D EL+H+ D D
Sbjct: 56 VAGGASSGKSTVCKMIIDQLRD-QRVVVVTQ-----ESF-YYGLSD-EELVHVHDYNFDH 107
Query: 619 ELQFGPNGGLVFCIETL 569
F L+ C+E L
Sbjct: 108 PDAFDTE-LLLSCMENL 123
>07_01_0789 -
6150257-6151046,6151167-6151390,6151816-6151991,
6152778-6153801
Length = 737
Score = 29.1 bits (62), Expect = 4.5
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Frame = -3
Query: 262 IDNYLDPD---PHVLLSDMRNAHSKWHEKYAKL-TEAIGEVVENFSLVRFYPLNIRDEES 95
ID L P+ PH ++ WHE KL EA + + F+ + + + E+
Sbjct: 556 IDTNLKPNSSQPHETTPPIKRVLHAWHEILGKLPDEAAKKAINTFAEI-VKTILVHQEDE 614
Query: 94 IENIMLTVDNIIQYGEDADVKIKDFDEW 11
++ M D YG+ K + FD+W
Sbjct: 615 LKLRMKIEDTRRDYGK----KRRQFDDW 638
>02_04_0271 +
21445113-21445865,21446727-21446788,21446927-21447027,
21447165-21447248,21448054-21448058,21448193-21448267,
21448339-21448416,21448896-21448952,21449351-21449421,
21449529-21449628,21449758-21449862,21450004-21450066,
21450144-21450266,21450371-21450514,21450598-21450672
Length = 631
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -3
Query: 799 LVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDD 635
L+GP GSGK+ T+ + I D L A+ D+ + ++++D+
Sbjct: 299 LMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQASRVADFNVQAAQQGMVYIDE 353
>07_03_1728 + 29076733-29079069
Length = 778
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 253 YLDPDPHVLLSDMRNAHSKWHEKYAKLTEAIG 158
+++P P + D + H +WHE + L+E G
Sbjct: 47 FVEPPPPLGHGDGEDDHCRWHESFLPLSELAG 78
>07_03_1324 -
25825153-25825197,25825705-25825785,25825907-25825967,
25826005-25826060,25826171-25826239,25826366-25826473,
25826555-25826635,25826795-25826951,25827060-25827177,
25827285-25827339,25827779-25827814
Length = 288
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 814 VTLS*LVGPAGSGKSTYCSTIVKH 743
VT+ ++G GSGK T C+ IV+H
Sbjct: 24 VTVVFVLGGPGSGKGTQCANIVEH 47
>02_05_0942 +
32970537-32970581,32971059-32971113,32971300-32971417,
32971567-32971615,32971637-32971723,32971890-32971970,
32972074-32972181,32972432-32972503,32973218-32973250
Length = 215
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 814 VTLS*LVGPAGSGKSTYCSTIVKH 743
VT+ ++G GSGK T C+ IV+H
Sbjct: 27 VTVVFVLGGPGSGKGTQCANIVEH 50
>06_01_0718 +
5233030-5233062,5233329-5233383,5233543-5233660,
5233746-5233902,5234033-5234113,5234213-5234320,
5234448-5234483
Length = 195
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 799 LVGPAGSGKSTYCSTIVKH 743
++G GSGK T CS IV+H
Sbjct: 28 VLGGPGSGKGTQCSNIVEH 46
>01_06_0849 +
32433429-32433743,32433840-32434021,32434235-32434310,
32434413-32434570,32435567-32435738,32435817-32435927,
32436197-32436280
Length = 365
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 274 ARKQIDNYLDPDPHVLLSDMRNAHSKWHEKYAKLTEAIGEVVEN 143
AR+ Y DP V + EKYA+L E+IGE+ N
Sbjct: 49 ARRAAGPYTGRDPEVKKPAWLRQRAAQGEKYARLRESIGELKLN 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,837,377
Number of Sequences: 37544
Number of extensions: 444973
Number of successful extensions: 1287
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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