Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19e12f
(814 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces... 217 2e-57
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 134 2e-32
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 88 1e-18
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 36 0.007
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 30 0.34
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 30 0.45
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 29 0.59
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 29 1.0
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 29 1.0
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 28 1.8
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 28 1.8
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 28 1.8
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 2.4
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 27 2.4
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 3.2
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 27 4.2
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 27 4.2
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 27 4.2
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 26 7.3
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 7.3
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 7.3
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 7.3
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 26 7.3
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 25 9.7
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 25 9.7
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 25 9.7
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 25 9.7
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 25 9.7
>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 276
Score = 217 bits (530), Expect = 2e-57
Identities = 95/179 (53%), Positives = 135/179 (75%), Gaps = 1/179 (0%)
Frame = +1
Query: 277 MRYAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLD 456
++ A + G A SGKST+C ++ + R +VNLDPAAE+F++EP VDIR+LI +D
Sbjct: 2 VKVAAFVCGVASSGKSTFCGALMSYMKSVGRSCHLVNLDPAAENFEWEPTVDIRDLISID 61
Query: 457 DAMEDEELQFGPNGGLVFCIETLLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPVMR 636
D ME EL +GPNGGL++C E L+EN DWL E++GD D+DY++FD PGQIELYTH+P++
Sbjct: 62 DVME--ELDYGPNGGLIYCFEFLMENLDWLNEEIGDYDEDYLIFDMPGQIELYTHVPILP 119
Query: 637 RLVDLLQ-NWNFRICVVFLVDSQFMIDGAKFLSGTMAALSVMVNLELPHVNVLTKMDLL 810
L+ LQ NFR C V+L++SQF++D KF +G ++A+S MV +E+PH+N+L+KMDLL
Sbjct: 120 ALIRHLQVTLNFRPCAVYLLESQFLVDRTKFFAGVLSAMSAMVMMEVPHINLLSKMDLL 178
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 134 bits (323), Expect = 2e-32
Identities = 65/179 (36%), Positives = 112/179 (62%), Gaps = 1/179 (0%)
Frame = +1
Query: 277 MRYAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLD 456
M + Q++VGP GSGKSTYC + + R +VNLDPA + Y +DIR+++ ++
Sbjct: 1 MPFCQVVVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNLDPANDFIKYPCAIDIRKVLDVE 60
Query: 457 DAMEDEELQFGPNGGLVFCIETLLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPVMR 636
+D +L GPNG L++ +E + + +WL ++L D Y++FDCPGQ+EL+T+ ++
Sbjct: 61 MIQKDYDL--GPNGALIYAMEAIEYHVEWLLKELKKHRDSYVIFDCPGQVELFTNHNSLQ 118
Query: 637 RLVDLLQ-NWNFRICVVFLVDSQFMIDGAKFLSGTMAALSVMVNLELPHVNVLTKMDLL 810
+++ L+ ++R V LVD+ + + ++S + L M+ L++PHVN+L+K DLL
Sbjct: 119 KIIKTLEKELDYRPVSVQLVDAYCCTNPSAYVSALLVCLKGMLQLDMPHVNILSKADLL 177
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 88.2 bits (209), Expect = 1e-18
Identities = 55/185 (29%), Positives = 97/185 (52%), Gaps = 4/185 (2%)
Frame = +1
Query: 265 NKKTMRYAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIREL 444
+K+ A ++VG AGSGK+T+ + H + ++NLDPA + YE +DIR+
Sbjct: 3 DKEKKPCAIIVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEANIDIRDT 62
Query: 445 IHLDDAMEDEELQFGPNGGLVFCIETLLENSDW----LEEQLGDVDDDYILFDCPGQIEL 612
I+ + M+ L GPNGG++ + + D LE++ V D+IL D PGQIE+
Sbjct: 63 INYKEVMKQYNL--GPNGGIMTSLNLFVTKFDQVLKILEKRAPTV--DHILIDTPGQIEI 118
Query: 613 YTHLPVMRRLVDLLQNWNFRICVVFLVDSQFMIDGAKFLSGTMAALSVMVNLELPHVNVL 792
+ + D L + ++ C+ ++VD+ + ++S + A S++ +LP + V
Sbjct: 119 FQWSASGSIICDTLAS-SWPTCIAYVVDTPRATSTSTWMSSMLYACSMLYKAKLPLIIVY 177
Query: 793 TKMDL 807
K D+
Sbjct: 178 NKCDV 182
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 35.9 bits (79), Expect = 0.007
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +1
Query: 262 LNKKTMRYAQLIVGPAGSGKSTYCSTIVK-HAMDSKRIVD 378
L ++ ++ ++VGP+GSGKST +T+ H MDSK +D
Sbjct: 26 LIRRGFQFNVMVVGPSGSGKSTLINTLFSAHLMDSKGRLD 65
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 30.3 bits (65), Expect = 0.34
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 292 LIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDP 396
++ GP GSGKS++ I + R + ++LDP
Sbjct: 335 MVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDP 369
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 29.9 bits (64), Expect = 0.45
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 613 YTHLPVMRRLVDLLQNWNFRICVV 684
Y HL V +R+ D+LQ W C V
Sbjct: 187 YAHLTVSKRMKDVLQTWGMNPCYV 210
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 29.5 bits (63), Expect = 0.59
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +1
Query: 295 IVGPAGSGKSTYCSTIVKH 351
I+GP+GSGKST+ S ++++
Sbjct: 467 IIGPSGSGKSTFISLLLRY 485
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 283 YAQLIVGPAGSGKSTYCSTI 342
Y LI+GP G+GKST S I
Sbjct: 34 YLNLIIGPNGTGKSTIVSAI 53
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 241 LTTHVLDLNKKTMRYAQLIVGPAGSGKSTYCSTI 342
+T ++ + +Y +++GPAGSGK+T +
Sbjct: 1 MTVTPINPTNQPYKYVFVVIGPAGSGKTTMAKAV 34
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 241 LTTHVLDLNKKTMRYAQLIVGPAGSGKSTYCSTIVK--HAMDSKRIVDVVNLDPAAEHFD 414
L ++L K R + G GSGKST C+ + K + IV ++ +D H+
Sbjct: 16 LYNRAVELLKHQQRVLIGLAGGPGSGKSTLCAILAKAWNERFGSEIVKIIPMD--GFHYS 73
Query: 415 YEPL 426
E L
Sbjct: 74 LEEL 77
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 259 DLNKKTMRYAQL-IVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLD 393
D+N + + ++ IVG GSGKST T+++ M V+V +D
Sbjct: 1199 DINLEILPKEKIAIVGRTGSGKSTMGLTLLRFTMIMSGAVEVDGID 1244
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 168 IKRR*ENRQLCKDNLFVLTKNINRVNNS-CFRSKQKNNALR 287
+ R E R+LC+ L L+KNI + + C+ + Q N+L+
Sbjct: 976 VSRLRELRKLCQSFLVALSKNIENIPYALCYTAAQLKNSLQ 1016
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.5 bits (58), Expect = 2.4
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +1
Query: 292 LIVGPAGSGKSTYCSTIV-KHAMDSKRIVDVVNLDPAAEHFDYEPLVDI-REL-IHLDDA 462
+IVGP GSGKS I+ + A + VV L+ + D L +I R+L I L+
Sbjct: 579 IIVGPRGSGKSVLVDDILSRAAQEINEKSYVVRLNGTYQTDDKLALREISRQLSIELESI 638
Query: 463 MEDEELQ 483
DE L+
Sbjct: 639 ESDEALK 645
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = -1
Query: 376 LQCVWSPLHVSLL*SSMLTFHFRLVPLLTERNALFFCLDLKHELLTRFIFFVRT 215
+Q ++ P +L+ SS++ F R+V + ++F DLK + FIF++ T
Sbjct: 497 VQSLYHP-SAALMGSSLVEFPMRIVVVTMYDIIVYFLSDLKRNARSFFIFYLFT 549
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 523 LLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPV 630
L++N D + G+++DD I+F P ++ Y H+ V
Sbjct: 380 LVQNKDMEVDDGGEIEDDAIVFSVPPTLQEY-HVSV 414
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 295 IVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLD 393
I GP+GSGK++ IVK A++ +V +++LD
Sbjct: 26 IAGPSGSGKTSVAQLIVK-ALNLPHVV-ILSLD 56
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 556 VAPLTSQNSLRGSLYKTLDHHLVQIAIPHLP*HHQG 449
+ P +NSL S ++ HH PHLP +HQG
Sbjct: 146 IDPFEVKNSLHDSTDLSITHH------PHLPINHQG 175
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 295 IVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDP 396
++GP GK++ + +A+ R VNLDP
Sbjct: 111 LIGPRSCGKTSVLKILESYALKQSRHPICVNLDP 144
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 343 VKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDEELQ 483
+ + ++ K I + +L PA +PL+ +++ +A EDE+LQ
Sbjct: 63 IANVLEPKLIDNQYSLIPALPSARTDPLLSQLNSLNIQNATEDEKLQ 109
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 7.3
Identities = 8/34 (23%), Positives = 21/34 (61%)
Frame = +1
Query: 262 LNKKTMRYAQLIVGPAGSGKSTYCSTIVKHAMDS 363
+++ + + ++ G +G GK+T+C+T+ + S
Sbjct: 22 VSRNGVAFTLMLCGESGLGKTTFCNTLFSTTIKS 55
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 292 LIVGPAGSGKSTYCSTIVKH 351
++VG GSGK+T CS + H
Sbjct: 105 MMVGLQGSGKTTTCSKLALH 124
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.8 bits (54), Expect = 7.3
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 8/148 (5%)
Frame = +1
Query: 295 IVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDP---AAEHFDYEPLVDI--RELIHLDD 459
++ P GSGKST I + + +D LD E E ++DI +E HL+
Sbjct: 306 LIAPNGSGKSTLLHAIACGLIPTPSSLDFYLLDREYIPNELTCVEAVLDINEQERKHLEA 365
Query: 460 AMEDEELQFGPNGGLVFCIETLLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPVMRR 639
MED L P+ V ++T+ LE + + D+ ++ ++ +T + +R
Sbjct: 366 MMED--LLDDPDKNAVE-LDTIQTRLTDLETE----NSDHRVYKILRGLQ-FTDEMIAKR 417
Query: 640 LVDLLQNWNFRIC---VVFLVDSQFMID 714
+L W RI ++F+ + M+D
Sbjct: 418 TNELSGGWRMRIALARILFIKPTLMMLD 445
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 237 GLYFLLERIGYLCIAACFLIASLSFLNFELQDVFCKL 127
GLY L+ R+ + I + SLS+ L+DV KL
Sbjct: 353 GLYTLICRLRHTVIKTGLRMISLSYSRISLRDVCIKL 389
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 295 IVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFD 414
++G GSGKST+ ++ ++ +D L+ AE D
Sbjct: 106 LLGDNGSGKSTFLESVAARDVEYPEHIDSYLLNAEAEPSD 145
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 262 LNKKTMRYAQLIV--GPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAA 402
++K++ Y IV GP+G+GKS VK+ D ++ V +D A+
Sbjct: 1 MDKESYDYLVKIVLAGPSGTGKSCLLQRFVKNQWDD-QVSHTVGIDFAS 48
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -2
Query: 228 FLLERIGYLCIAACFLIA 175
FLLE I LCIA FLIA
Sbjct: 438 FLLEEIVELCIAEGFLIA 455
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 316 GKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIR 438
G +C + +SK ++ + NL A DY PL DIR
Sbjct: 359 GTLPFCRRYLDRIGESKYLLALNNLVSAGIVQDYPPLCDIR 399
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +1
Query: 535 SDWLEEQLGDVDDDYILFDCPGQIELYTHLPVMR 636
S W +L + Y+ FDC + Y+ + V R
Sbjct: 63 SSWFNSKLSKLSAGYLQFDCQNDGKCYSVIAVHR 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,341,501
Number of Sequences: 5004
Number of extensions: 69618
Number of successful extensions: 245
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -