Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19e12f
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0911 + 28697654-28697698,28698170-28698278,28698352-286984... 228 3e-60
03_02_0933 - 12505196-12505286,12505759-12505814,12508780-125088... 179 3e-45
02_04_0215 - 20983210-20983293,20983440-20983512,20984072-209841... 99 5e-21
03_02_0781 + 11141469-11141486,11141855-11141978,11142024-111423... 74 1e-13
11_03_0011 + 8934346-8934398,8936014-8936198,8936334-8936425,893... 30 1.9
02_02_0411 - 9928175-9928187,9928385-9928575,9929044-9929126,992... 30 1.9
02_04_0271 + 21445113-21445865,21446727-21446788,21446927-214470... 30 2.5
06_01_0718 + 5233030-5233062,5233329-5233383,5233543-5233660,523... 29 4.4
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 29 4.4
03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565... 29 4.4
02_02_0074 + 6567362-6567550,6567685-6567753,6567869-6567970,656... 28 7.7
>03_05_0911 +
28697654-28697698,28698170-28698278,28698352-28698433,
28698486-28698514,28699472-28699567,28699860-28699963,
28700071-28700201,28700276-28700369,28701666-28701721,
28702728-28702821
Length = 279
Score = 228 bits (558), Expect = 3e-60
Identities = 111/194 (57%), Positives = 144/194 (74%), Gaps = 15/194 (7%)
Frame = +1
Query: 277 MRYAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLD 456
M YAQL++GPAGSGKSTYCS++ +H R + +VNLDPAAEHF Y DIRELI LD
Sbjct: 1 MGYAQLVIGPAGSGKSTYCSSLYQHCETVGRTIHMVNLDPAAEHFSYPVSTDIRELISLD 60
Query: 457 DAMEDEELQFGPNGGLVFCIETL------------LENS--DWLEEQL-GDVDDDYILFD 591
D ME EL GPNGGL++C+E L LE++ DWL+EQL G +DDDY++FD
Sbjct: 61 DVME--ELGMGPNGGLIYCMELLKLLTDPSENHRHLEDNLDDWLDEQLEGYLDDDYLVFD 118
Query: 592 CPGQIELYTHLPVMRRLVDLLQNWNFRICVVFLVDSQFMIDGAKFLSGTMAALSVMVNLE 771
CPGQIEL+TH+PV+R V+ L+ NF +C V+L+DSQF+ D K++SG MA+LS M+ LE
Sbjct: 119 CPGQIELFTHVPVLRNFVEHLKRKNFNVCAVYLLDSQFVSDVTKYISGCMASLSAMIQLE 178
Query: 772 LPHVNVLTKMDLLS 813
LPH+N+L+KMDL+S
Sbjct: 179 LPHINILSKMDLVS 192
>03_02_0933 -
12505196-12505286,12505759-12505814,12508780-12508873,
12508949-12509079,12509187-12509290,12509585-12509680,
12510752-12510860,12511252-12511296
Length = 241
Score = 179 bits (435), Expect = 3e-45
Identities = 89/180 (49%), Positives = 121/180 (67%), Gaps = 1/180 (0%)
Frame = +1
Query: 277 MRYAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLD 456
M YAQL++GPAGSGKSTYCS++ +H R + +VNLDPAAEHF Y V HL+
Sbjct: 1 MGYAQLVIGPAGSGKSTYCSSLYQHCETVGRTIHMVNLDPAAEHFSYP--VSTENHRHLE 58
Query: 457 DAMEDEELQFGPNGGLVFCIETLLENSDWLEEQL-GDVDDDYILFDCPGQIELYTHLPVM 633
D ++D WL+EQL G +DDDY++FDCPGQIEL+TH+PV+
Sbjct: 59 DNLDD-----------------------WLDEQLDGYLDDDYLVFDCPGQIELFTHVPVL 95
Query: 634 RRLVDLLQNWNFRICVVFLVDSQFMIDGAKFLSGTMAALSVMVNLELPHVNVLTKMDLLS 813
R V+ L+ NF +C V+ +DSQF+ D K++SG MA+LS M+ LELPH+N+L+KMDL++
Sbjct: 96 RNFVEHLKRKNFNVCAVYFLDSQFVSDVTKYISGCMASLSAMIQLELPHINILSKMDLVA 155
>02_04_0215 -
20983210-20983293,20983440-20983512,20984072-20984159,
20984232-20984388,20984472-20984575,20985045-20985119,
20985144-20985213
Length = 216
Score = 98.7 bits (235), Expect = 5e-21
Identities = 45/106 (42%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Frame = +1
Query: 499 GLVFCIETLLENSDWLEEQLGD-VDDDYILFDCPGQIELY-THLPVMRRLVDLLQNWNFR 672
GLV+C++ L +N DWLEE+L ++D Y+LFD PGQ+EL+ H + L++ N R
Sbjct: 24 GLVYCMDYLEKNIDWLEEKLKPLIEDHYLLFDFPGQVELFFLHSNARSIIYKLIKKLNLR 83
Query: 673 ICVVFLVDSQFMIDGAKFLSGTMAALSVMVNLELPHVNVLTKMDLL 810
+ V L+D+ D K++S + +LS M+++ELPH+NVL+K+DL+
Sbjct: 84 LTAVHLIDAHLCCDPGKYVSALLLSLSTMLHMELPHINVLSKIDLI 129
>03_02_0781 +
11141469-11141486,11141855-11141978,11142024-11142340,
11143219-11143509,11143751-11143956,11144048-11144327
Length = 411
Score = 74.1 bits (174), Expect = 1e-13
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = +1
Query: 310 GSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDEELQFG 489
G+GK+T+ +V H S V+NLDPA + +DIR+ + + M +E G
Sbjct: 78 GTGKTTFMHRLVCHTQASNMRGYVLNLDPAVMTLPFGANIDIRDTVRYKEVM--KEYGLG 135
Query: 490 PNGGLVFCIETLLENSDWLEEQLGDVDD--DYILFDCPGQIELYTHLPVMRRLVDLLQNW 663
PNGG++ + D + + D DY+L D PGQIE++T + + +
Sbjct: 136 PNGGILTSLNLFSTKFDEVISVIERRADQLDYVLVDTPGQIEIFTWSASGAIITEAFAS- 194
Query: 664 NFRICVVFLVDSQFMIDGAKFLSGTMAALSVMVNLELPHVNVLTKMDL 807
F V ++VD+ F+S + A S++ LP + K+D+
Sbjct: 195 TFPTVVAYVVDTPRSTSPVTFMSNMLYACSILYKTRLPMILTFNKVDV 242
>11_03_0011 +
8934346-8934398,8936014-8936198,8936334-8936425,
8937699-8937768,8937856-8937971,8939050-8939146,
8939965-8940044,8940198-8940392,8940548-8940631,
8940709-8940769,8941530-8941590,8942023-8942116,
8942188-8942260,8942573-8942655,8943241-8943431,
8943563-8943572
Length = 514
Score = 30.3 bits (65), Expect = 1.9
Identities = 28/77 (36%), Positives = 36/77 (46%)
Frame = +1
Query: 295 IVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDE 474
+ G A SGKST C I+ D +R+V V E F Y L D EL+H+ D D
Sbjct: 81 VAGGASSGKSTVCKMIIDQLRD-QRVVVVTQ-----ESF-YYGLSD-EELVHVHDYNFDH 132
Query: 475 ELQFGPNGGLVFCIETL 525
F L+ C+E L
Sbjct: 133 PDAFDTE-LLLSCMENL 148
>02_02_0411 -
9928175-9928187,9928385-9928575,9929044-9929126,
9929444-9929516,9929588-9929681,9930100-9930160,
9930824-9930884,9930963-9931046,9931196-9931390,
9931526-9931605,9932595-9932691,9934198-9934313,
9934407-9934476,9935439-9935530,9935661-9935823
Length = 490
Score = 30.3 bits (65), Expect = 1.9
Identities = 28/77 (36%), Positives = 36/77 (46%)
Frame = +1
Query: 295 IVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDE 474
+ G A SGKST C I+ D +R+V V E F Y L D EL+H+ D D
Sbjct: 56 VAGGASSGKSTVCKMIIDQLRD-QRVVVVTQ-----ESF-YYGLSD-EELVHVHDYNFDH 107
Query: 475 ELQFGPNGGLVFCIETL 525
F L+ C+E L
Sbjct: 108 PDAFDTE-LLLSCMENL 123
>02_04_0271 +
21445113-21445865,21446727-21446788,21446927-21447027,
21447165-21447248,21448054-21448058,21448193-21448267,
21448339-21448416,21448896-21448952,21449351-21449421,
21449529-21449628,21449758-21449862,21450004-21450066,
21450144-21450266,21450371-21450514,21450598-21450672
Length = 631
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +1
Query: 292 LIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDD 459
L++GP GSGK+ T+ + I D L A+ D+ + ++++D+
Sbjct: 298 LLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQASRVADFNVQAAQQGMVYIDE 353
>06_01_0718 +
5233030-5233062,5233329-5233383,5233543-5233660,
5233746-5233902,5234033-5234113,5234213-5234320,
5234448-5234483
Length = 195
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 295 IVGPAGSGKSTYCSTIVKH 351
++G GSGK T CS IV+H
Sbjct: 28 VLGGPGSGKGTQCSNIVEH 46
>04_04_1035 +
30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +3
Query: 198 CKDNLFVLTKNINRVNNSCFRSKQKNNALRSVNSGTSRKWKVNILLYNS 344
C + F++ K +NR SC + + + +G R W N + N+
Sbjct: 462 CAKSAFIIEKELNRAKLSCLQLLEDLERSLDLPTGRDRNWIQNYCMRNA 510
>03_05_1149 +
30753463-30754695,30754834-30755017,30755321-30756549,
30756702-30756816,30757126-30758084
Length = 1239
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 235 TVLTTHVLDLNKKTMRYAQLIV-GPAGSGKSTYCSTIVKHAMDSKRI 372
+V+ +LDL Q+ + G SGKST CS+I KH M+S ++
Sbjct: 445 SVVPNDLLDLPLSAPTCCQVFLCGQELSGKSTLCSSI-KHCMNSMKL 490
>02_02_0074 +
6567362-6567550,6567685-6567753,6567869-6567970,
6568386-6568627,6569057-6569195,6569298-6569333,
6569838-6569972,6570315-6570547,6571204-6571298,
6571331-6571374,6571808-6571888
Length = 454
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 292 LIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLD 393
+IVGP+ SGKST C ++ A V+LD
Sbjct: 125 IIVGPSDSGKSTLCKMLLSWAAKQGWKPTYVDLD 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,431,707
Number of Sequences: 37544
Number of extensions: 409500
Number of successful extensions: 1189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -