Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19e12f
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   1.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.9  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   7.8  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   7.8  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 408 VFSCWVQVYYI 376
           V SCW+ VYYI
Sbjct: 68  VMSCWMNVYYI 78


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +3

Query: 135 RTRLEVQNSKKIKRR*ENRQLCKDNLFVLTKNINRVNNSCFRSKQKNN 278
           RT  E     KI     N+ +  +N +    N N  NN+ + +   NN
Sbjct: 303 RTERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNN 350


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +3

Query: 285 RSVNSGTSRKWKVNILLYNSETCNGLQTHCRCSKLG 392
           + V++GT   + ++  +Y ++ C    +  R SK+G
Sbjct: 623 KRVSAGTPAAFNISTTIYENQNCLDASSSRRGSKIG 658


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 408 VFSCWVQVYYI 376
           V SCW  +YYI
Sbjct: 106 VLSCWTNIYYI 116


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 408 VFSCWVQVYYI 376
           V SCW  +YYI
Sbjct: 159 VLSCWTNIYYI 169


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 282 LRSVNSGTSRKWKVNILLYNS 344
           +R +     R WK ++L+YNS
Sbjct: 95  VRDLRIPPHRLWKPDVLMYNS 115


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 723 IFIRYNGCIKCNGESGT 773
           I+IR+N  +KC G+  T
Sbjct: 112 IYIRFNKLVKCFGKYKT 128


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 723 IFIRYNGCIKCNGESGT 773
           I+IR+N  +KC G+  T
Sbjct: 112 IYIRFNKLVKCFGKYKT 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,903
Number of Sequences: 438
Number of extensions: 4792
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)