Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19e07f
         (482 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51991| Best HMM Match : UPF0185 (HMM E-Value=3.3e-14)               77   1e-14
SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_53293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_51991| Best HMM Match : UPF0185 (HMM E-Value=3.3e-14)
          Length = 334

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 38/47 (80%), Positives = 41/47 (87%)
 Frame = +2

Query: 89  FLICV*FKMSKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEE 229
           FL+   F  SKVTFKITLTSDPKLP+KVLSVPE TPFTAVL+FAAEE
Sbjct: 10  FLLPDFFYRSKVTFKITLTSDPKLPYKVLSVPENTPFTAVLRFAAEE 56


>SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -2

Query: 319 LQEYITGCLLRIYADTVISDNSTGGRVHPEFFSCKLQHCSEWSRFRHAKYFKRQ 158
           L++ +  CL++IY  T    + +   +H E     L+    W R RH+ +  ++
Sbjct: 786 LEKQVFDCLIKIYGGTA---SFSALLLHTELLPPPLESTENWLRRRHSSFLLKE 836


>SB_53293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 413

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -3

Query: 312 NTLPAVC*GFMPIPSSVIIALVAGSTLNSSAANFNTAVNGVASGTLSTLNGSFGS 148
           +TL   C   +  PS + +  + G  L++S+  F+ A   V+S     LNG+FGS
Sbjct: 71  HTLQKAC--TIKFPSDMKMLAMLGGELSNSSRYFS-AFGNVSSHDCGDLNGTFGS 122


>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 20/58 (34%), Positives = 32/58 (55%)
 Frame = +2

Query: 176  SVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQTAGNVFLKHGSELRLIPR 349
            S+ +A     VL    E+F V+  TSA+++++  G    ++ GN F K GS  R IP+
Sbjct: 1047 SIKQANNIKNVL--TKEDFLVNE-TSAVLSENFPGSESNKSIGNAFTKKGS-TRDIPK 1100


>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 177 LSTLNGSFGSDVSVILKVTFDILNYTQIKKFMFNFVSQFITNYK 46
           ++  N S    +   L VTFDI     +K  +FN VSQ +  ++
Sbjct: 319 ITPYNDSASDGILTSLNVTFDIKGSFLVKVRVFNLVSQRLLKHE 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,346,473
Number of Sequences: 59808
Number of extensions: 259628
Number of successful extensions: 597
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)