Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19e07f
         (482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-8|AAA28214.1|   94|Caenorhabditis elegans Hypothetical pr...   153   5e-38
AF303260-1|AAG50218.1|   94|Caenorhabditis elegans 3H949 protein.     153   5e-38
AL132948-18|CAD31819.1|  390|Caenorhabditis elegans Hypothetical...    29   1.8  
AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    28   3.1  
Z82092-3|CAB05013.1|  638|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AL021471-3|CAA16297.1|  638|Caenorhabditis elegans Hypothetical ...    27   5.4  
Z98851-2|CAB11536.1|  324|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>L14429-8|AAA28214.1|   94|Caenorhabditis elegans Hypothetical
           protein ZK652.3 protein.
          Length = 94

 Score =  153 bits (372), Expect = 5e-38
 Identities = 72/82 (87%), Positives = 78/82 (95%)
 Frame = +2

Query: 116 SKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQ 295
           SKVTFKITLTSDPKLPFKVLSVPE+TPFTAVLKFAAEEF+V  ATSAIIT+DG+G+NP Q
Sbjct: 12  SKVTFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGVGVNPAQ 71

Query: 296 TAGNVFLKHGSELRLIPRDRVG 361
            AGN+FLKHGSELRLIPRDRVG
Sbjct: 72  PAGNIFLKHGSELRLIPRDRVG 93


>AF303260-1|AAG50218.1|   94|Caenorhabditis elegans 3H949 protein.
          Length = 94

 Score =  153 bits (372), Expect = 5e-38
 Identities = 72/82 (87%), Positives = 78/82 (95%)
 Frame = +2

Query: 116 SKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQ 295
           SKVTFKITLTSDPKLPFKVLSVPE+TPFTAVLKFAAEEF+V  ATSAIIT+DG+G+NP Q
Sbjct: 12  SKVTFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGVGVNPAQ 71

Query: 296 TAGNVFLKHGSELRLIPRDRVG 361
            AGN+FLKHGSELRLIPRDRVG
Sbjct: 72  PAGNIFLKHGSELRLIPRDRVG 93


>AL132948-18|CAD31819.1|  390|Caenorhabditis elegans Hypothetical
           protein Y39B6A.22 protein.
          Length = 390

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 254 AIITDDGIGINPQQTAGNVFLKHGSELRLIPRDRVGFSL 370
           A+ TD   G  P    GNVFL+    +  +   R+GF++
Sbjct: 347 AMFTDSSTGFGPSFGFGNVFLRQYCNIFDVGNARIGFAI 385


>AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical
           protein Y59A8B.6 protein.
          Length = 968

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 285 FMPIPSSVIIALVAGSTLNSSAANFNTAVNGVASGTLSTLNGSFGS 148
           F P+P S+I   +    ++ S  + N      ASG +STL G  G+
Sbjct: 192 FTPVPDSIIAMNMNYGQMSHSIDSGNGLTTPFASGFMSTLGGGGGA 237


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
           protein W05F2.7 protein.
          Length = 1424

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 113 MSKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEF 232
           ++K T K+ L++ P+    VL  P    FT ++KF  EEF
Sbjct: 132 ITKKTTKLHLSASPQTGHAVLPYP----FTGIIKFQTEEF 167


>Z82092-3|CAB05013.1|  638|Caenorhabditis elegans Hypothetical
           protein ZK384.3 protein.
          Length = 638

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = +2

Query: 137 TLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATSAIITD--DGIGINPQQTAGNV 310
           T+ S P L F + +  E  P +A      E+  +D  T A+     D  G  P  T GN+
Sbjct: 309 TMNSLPDLVFTIGA--EKFPISA--PEYVEDVGLDDGTCALAMYGIDASGFGPSVTLGNI 364

Query: 311 FLKHGSELRLIPRDRVGFS 367
           F++    +  +   R+GF+
Sbjct: 365 FIRRYCSVFDVGNARIGFA 383


>AL021471-3|CAA16297.1|  638|Caenorhabditis elegans Hypothetical
           protein ZK384.3 protein.
          Length = 638

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = +2

Query: 137 TLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATSAIITD--DGIGINPQQTAGNV 310
           T+ S P L F + +  E  P +A      E+  +D  T A+     D  G  P  T GN+
Sbjct: 309 TMNSLPDLVFTIGA--EKFPISA--PEYVEDVGLDDGTCALAMYGIDASGFGPSVTLGNI 364

Query: 311 FLKHGSELRLIPRDRVGFS 367
           F++    +  +   R+GF+
Sbjct: 365 FIRRYCSVFDVGNARIGFA 383


>Z98851-2|CAB11536.1|  324|Caenorhabditis elegans Hypothetical
           protein H12I19.2 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 13  IYLYYCVRHFSFVICNKLGNEIEHK 87
           IY  + V+ F F++C ++GN I  K
Sbjct: 156 IYALFIVKDFIFLLCLEIGNSIGSK 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,288,780
Number of Sequences: 27780
Number of extensions: 209954
Number of successful extensions: 517
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)