Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19e03r
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    30   0.36 
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    27   2.5  
SPAC1782.03 |||microfibrillar-associated protein family protein|...    27   4.4  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    27   4.4  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    26   5.8  
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    26   7.7  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   7.7  

>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -1

Query: 533 LGTPIKKVVTSEIPCIDKLQKSLVMGSTKNKGEILYPGDVKIKVAEPKGLNALHLEDVIY 354
           L  PI+K ++      D  Q   V     N  EI     ++ ++ EP GL     E V+Y
Sbjct: 130 LRLPIRKQISK-----DSSQSQNVDSGKTNHEEIHESRHLQTEIEEPSGLEESSEESVLY 184

Query: 353 KTLVYDKKEDE 321
               Y+K ++E
Sbjct: 185 SEEFYEKSDEE 195


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 189 LLCNYFEQSLESALYVAINSYIYSYC 266
           +L +Y+   L+SAL+ A++SY+   C
Sbjct: 253 MLYHYYPSFLQSALWTAVSSYLEERC 278


>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -1

Query: 590 LTPSEFQQLVRDVRVIEASLGTPIKKVVTSEIPCIDKLQKSLVMGSTKNKGEIL 429
           L P +F   V   R       T + K VTS+    + +++ L++  TKN  E+L
Sbjct: 126 LLPPKFTSKVIKNRAKANEEDTEVLKKVTSQKILEETIKRELLLKETKNNNELL 179


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 11/53 (20%)
 Frame = -1

Query: 836 IISSDHKQFCLLHCISAYPVP---------FEDC--NLTVLQDYKNTFDVPVG 711
           +I + H   CLLH +S  P P          EDC  NL + + + N F+V +G
Sbjct: 193 VIHNSHLATCLLHSLSEPPTPASTLTAEAALEDCESNLPLTETFSN-FEVSLG 244


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/71 (22%), Positives = 36/71 (50%)
 Frame = -1

Query: 644 EKHITLDKSMKGTDHVCSLTPSEFQQLVRDVRVIEASLGTPIKKVVTSEIPCIDKLQKSL 465
           E++  + +S+     +CS   +E+ ++  +   ++      +  ++ S +  I+KLQ S+
Sbjct: 181 ERNEEMFQSLIEDKRLCSQVRTEYDRIRMEASELKIRYHN-VDSLMASTLEEIEKLQSSI 239

Query: 464 VMGSTKNKGEI 432
           V    K KG+I
Sbjct: 240 VHSPEKLKGKI 250


>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 566 LVRDVRVIEASL--GTPIKKVVTSEIPCID 483
           LV    +++ +L  GTP+++VV   I CID
Sbjct: 34  LVWGPEIVDKALLSGTPVERVVNDRINCID 63


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 85  NLQYILCAIQKYIISKMFFNNFRNIYIANNLPTIIYC 195
           N+   L  I    + ++F     +IY   NLP +IYC
Sbjct: 103 NINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYC 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,317,841
Number of Sequences: 5004
Number of extensions: 65237
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)